RchiOBHm_Chr6g0247901

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
3909407 .. 3909746
340 bp
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UTR
Exon/CDS
Intron
PRQ22223

Sequence Viewer

Length: 219 bp
ATGTTCAAGGAAATGCAGAATGCTAACAAGGCTCTTCTTTCTGGATGTTCCGCTGGGGTTCTGGCATCCATGCTACACTGTGATGTGTTCTGGGACTTGTTTCCATCCAGTACCACAGTGAAATGTTCCTTGATGCGTAAGGAATTCATGGCTTTTATCAATGTGGAATTTTTGATTGAAATTGGTGTATTTGGGGGGCACACTCTAAGGAATTTGTAA

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

6.7

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 3 - 42 1.2e-13 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcsI RAATTY 3 cut(s) 143, 167, 211
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 2 cut(s) 7, 179
ApoI RAATTY 3 cut(s) 143, 167, 211
BaeGI GKGCMC 1 cut(s) 201
BccI CCATC 1 cut(s) 112
BmsI GCATC 2 cut(s) 74, 123
Bse1I ACTGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 50, 65, 104
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 80, 118
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 50, 65, 104
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 50, 65, 104
BtsIMutI CAGTG 2 cut(s) 76, 123
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 70, 148
CviJI RGCY 2 cut(s) 32, 152
CviKI_1 RGCY 2 cut(s) 32, 152
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 143
FaeI CATG 2 cut(s) 73, 151
FaiI YATR 2 cut(s) 71, 149
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 69, 147
FokI GGATG 3 cut(s) 52, 57, 91
GsaI CCCAGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 73, 151
Hpy188III TCNNGA 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 80, 118
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 73, 151
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 27, 39, 47, 76, 121
LweI GCATC 2 cut(s) 74, 123
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 143, 167, 180, 211
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 73, 151
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 53
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 2 cut(s) 74, 123
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 4 cut(s) 143, 167, 180, 211
SsiI CCGC 1 cut(s) 51
TaaI ACNGT 2 cut(s) 80, 118
TasI AATT 4 cut(s) 143, 167, 180, 211
TscAI CASTG 2 cut(s) 83, 123
TspDTI ATGAA 1 cut(s) 136
TspRI CASTG 2 cut(s) 83, 123
XapI RAATTY 3 cut(s) 143, 167, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.