Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001587

Physical Location & Seq

Genomic Coordinates Reverse (-)

11323341 .. 11326768

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG130600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGGGTCAACGGCGAACCTCAGACTCCGCAGCCTTGGATGGTGGAGAAAGTGGGCCAGAAAGGACTGGGCAATCGCCACCCTCGCCTTCACCGTCATCGTCTTCCTTCTCACTCTCATCTCCAACTCTTTGCCCGACGAACCAGACTCCAGCGTCAGCAACCCCTTCGATCCAACCACCGCCGCCGATTTGGTCGACTTGACTCTGCTGCACGACGCCGAACGCAGAGGCGCCCACTTCTTTAACTGGAACAAAGTCAAAATACGGTACTGTGATGGCGCGTCTTTTGCTGGCCACCCCGAAAATGAGCCCAAGAATGGATCAAAGCTTTACTTTAGGGGACAGCTCATCTGGGAAGCACTTATGGATGAACTCTTGTCAATTGGCTTGTCAAAGGCGAAACGGGCACTTCTTTCTGGATGCTCTGCCGGTGGGTTGGCAACTCTTATACACTGTGATGACTTTCGAGGTCTTCTACCTAGGGATTCAACTGTCAAATGTCTTGCTGATGCAGGTTTTTTTCTCGATGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

6.07

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	70 - 178	3.1e-46	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09405 AT3G09405 AT3G09410 AT3G09410
fragaria_vesca	FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810
malus_domestica	MD04G1127600.v1.1 MD04G1127800.v1.1 MD04G1127900.v1.1 MD04G1128300.v1.1 MD12G1141000.v1.1
prunus_persica	Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1
pyrus_communis	pycom04g11450 pycom04g11460 pycom04g11490 pycom04g11500 pycom04g11580 pycom04g11590 pycom126g00010 pycom126g00060 pycom12g13590
rosa_chinensis	RchiOBHm_Chr3g0466681 RchiOBHm_Chr3g0466741 RchiOBHm_Chr6g0247901
rosa_laevigata	RLG00000024557
rosa_multiflora	Rmu_sc0001726.1_g000008
rosa_roxburghii	Rroxscaffold_180G00433190 Rroxscaffold_6G00403990 Rroxscaffold_6G00414210
rosa_rugosa	Rorug03G0083400.1 Rorug03G0083500
rosa_samantha	Rh3AG130200 Rh3AG130600 Rh3BG151600 Rh3CG151500 Rh3DG152300 Rh6AG044200 Rh6BG038900
rosa_wichuraiana	Rw3G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	284
AciI	CCGC	4 cut(s)	5, 31, 183, 186
AclWI	GGATC	2 cut(s)	167, 331
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	219, 234
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	492
AluBI	AGCT	2 cut(s)	331, 349
AluI	AGCT	2 cut(s)	331, 349
AlwI	GGATC	2 cut(s)	167, 331
AoxI	GGCC	2 cut(s)	57, 295
ApeKI	GCWGC	2 cut(s)	33, 211
AspA2I	CCTAGG	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	236, 284
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	97, 467
BbvI	GCAGC	2 cut(s)	45, 198
BccI	CCATC	2 cut(s)	36, 272
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	3 cut(s)	34, 186, 212
BlnI	CCTAGG	1 cut(s)	482
BlsI	GCNGC	3 cut(s)	35, 187, 213
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	413, 502
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	97, 467
BpmI	CTGGAG	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	219, 234
BsaJI	CCNNGG	2 cut(s)	37, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	74, 254
BseDI	CCNNGG	2 cut(s)	37, 482
BseGI	GGATG	3 cut(s)	47, 376, 428
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	2 cut(s)	74, 254
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	45, 198
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	59, 297
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	59, 297
Bsp1286I	GDGCHC	2 cut(s)	315, 412
Bsp143I	GATC	2 cut(s)	172, 323
BspACI	CCGC	4 cut(s)	5, 31, 183, 186
BspANI	GGCC	2 cut(s)	59, 297
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	167, 331
BspT107I	GGYRCC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	74, 254
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	37, 482
BssMI	GATC	2 cut(s)	172, 323
BssNI	GRCGYC	2 cut(s)	219, 234
BssT1I	CCWWGG	2 cut(s)	37, 482
Bst4CI	ACNGT	5 cut(s)	97, 270, 275, 458, 496
BstACI	GRCGYC	2 cut(s)	219, 234
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	47, 376, 428
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	236, 284
BstKTI	GATC	2 cut(s)	175, 326
BstMBI	GATC	2 cut(s)	172, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 290, 407
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	45, 198
BstV2I	GAAGAC	2 cut(s)	97, 467
BsuRI	GGCC	2 cut(s)	59, 297
BtsCI	GGATG	3 cut(s)	47, 376, 428
BtsIMutI	CAGTG	1 cut(s)	454
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	2 cut(s)	236, 284
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	3 cut(s)	145, 227, 273
Csp6I	GTAC	1 cut(s)	271
CviJI	RGCY	7 cut(s)	36, 59, 297, 313, 331, 349, 390
CviKI_1	RGCY	7 cut(s)	36, 59, 297, 313, 331, 349, 390
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	23
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	2 cut(s)	174, 325
DpnII	GATC	2 cut(s)	172, 323
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	37, 482
Eco24I	GRGCYC	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	37, 482
EcoT38I	GRGCYC	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	37, 482
FaiI	YATR	2 cut(s)	368, 452
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	34, 186, 212
FokI	GGATG	3 cut(s)	54, 383, 435
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	34, 186, 212
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	235, 283
GluI	GCNGC	3 cut(s)	34, 186, 212
GsuI	CTGGAG	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	59, 297
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	3 cut(s)	145, 227, 273
HhaI	GCGC	2 cut(s)	236, 284
Hin1I	GRCGYC	2 cut(s)	219, 234
Hin6I	GCGC	2 cut(s)	234, 282
HinP1I	GCGC	2 cut(s)	234, 282
HincII	GTYRAC	2 cut(s)	12, 199
HindII	GTYRAC	2 cut(s)	12, 199
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	27, 149, 205, 488
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	12, 199
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	420, 527
Hpy8I	GTNNAC	2 cut(s)	12, 199
Hpy99I	CGWCG	2 cut(s)	143, 221
HpyAV	CCTTC	3 cut(s)	100, 119, 178
HpyCH4III	ACNGT	5 cut(s)	97, 270, 275, 458, 496
HpyCH4V	TGCA	2 cut(s)	214, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 290, 407
HpyF3I	CTNAG	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	219, 234
HspAI	GCGC	2 cut(s)	234, 282
KasI	GGCGCC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	172, 323
Lsp1109I	GCAGC	2 cut(s)	45, 198
LweI	GCATC	2 cut(s)	413, 502
MaeI	CTAG	1 cut(s)	483
MalI	GATC	2 cut(s)	174, 325
MboI	GATC	2 cut(s)	172, 323
MboII	GAAGA	2 cut(s)	97, 467
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	315, 412
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	297
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	3 cut(s)	21, 143, 199
MmeI	TCCRAC	2 cut(s)	150, 200
MnlI	CCTC	4 cut(s)	32, 95, 224, 464
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	86, 290, 407
NarI	GGCGCC	1 cut(s)	234
NdeII	GATC	2 cut(s)	172, 323
NlaIV	GGNNCC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	35, 187, 213
PleI	GAGTC	3 cut(s)	21, 143, 199
PluTI	GGCGCC	1 cut(s)	237
PpsI	GAGTC	3 cut(s)	21, 143, 199
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	34, 186, 212
Sau3AI	GATC	2 cut(s)	172, 323
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	3 cut(s)	21, 143, 199
SduI	GDGCHC	2 cut(s)	315, 412
SetI	ASST	6 cut(s)	24, 333, 351, 475, 484, 520
SfaNI	GCATC	2 cut(s)	413, 502
SfoI	GGCGCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	4 cut(s)	5, 31, 183, 186
SspDI	GGCGCC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	37, 482
TaaI	ACNGT	5 cut(s)	97, 270, 275, 458, 496
TaqI	TCGA	4 cut(s)	171, 198, 469, 528
TasI	AATT	1 cut(s)	384
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	2 cut(s)	33, 211
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	461
XmaJI	CCTAGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.