MD04G1127900.v1.1

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
21350188 .. 21351290
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1127900.v1.1.491

Sequence Viewer

Length: 282 bp
ATGAGGTCTTTCTATAATGATGTTGCCATCCTTCAGTGTTTATCAAAAAGTTTGCACAAGGATTGTCTTTCGAGGATGGAACCAGCTAAGTGTCTCTTTCCTGAAGAAGTTATTAAATACATTAATACCCCAGTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGGTACAACATATCTTGATACCTGAAGCAGCAGATCCACATGGCTATTGGAGAAAGTGTAAACTGAACATTCACAATTGTAATCCCAGCCAGCTTAAAACACTTGATGGTAATTAA

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

7.66

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 1 - 91 9.5e-30 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 3 cut(s) 17, 123, 210
AfaI GTAC 1 cut(s) 171
AluBI AGCT 3 cut(s) 86, 152, 259
AluI AGCT 3 cut(s) 86, 152, 259
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 194
AseI ATTAAT 1 cut(s) 123
BbvI GCAGC 1 cut(s) 206
BccI CCATC 3 cut(s) 35, 70, 266
BcoDI GTCTC 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 27, 81
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 206
BseYI CCCAGC 2 cut(s) 148, 251
BsmAI GTCTC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 131
BssMI GATC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 27, 81
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 2 cut(s) 27, 81
BtsIMutI CAGTG 2 cut(s) 41, 138
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 86, 152, 210, 255, 259
CviKI_1 RGCY 5 cut(s) 86, 152, 210, 255, 259
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco57I CTGAAG 3 cut(s) 17, 123, 210
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 15, 156, 177, 207
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 14, 88
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 2 cut(s) 152, 255
Hin1II CATG 1 cut(s) 209
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 145, 227
Hpy188III TCNNGA 2 cut(s) 101, 181
Hpy8I GTNNAC 2 cut(s) 145, 227
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 8 cut(s) 96, 114, 144, 152, 162, 201, 265, 269
Lsp1109I GCAGC 1 cut(s) 206
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 241, 277
MnlI CCTC 1 cut(s) 66
MseI TTAA 4 cut(s) 114, 123, 261, 280
MunI CAATTG 1 cut(s) 241
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 123
PspFI CCCAGC 2 cut(s) 148, 251
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 4 cut(s) 114, 123, 261, 280
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 199
SetI ASST 6 cut(s) 8, 88, 154, 171, 190, 261
Sse9I AATT 2 cut(s) 241, 277
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 241, 277
Tru1I TTAA 4 cut(s) 114, 123, 261, 280
Tru9I TTAA 4 cut(s) 114, 123, 261, 280
TscAI CASTG 2 cut(s) 41, 138
TseI GCWGC 1 cut(s) 194
TspRI CASTG 2 cut(s) 41, 138
VspI ATTAAT 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.