Rroxscaffold_180G00433190

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
Physical Location & Seq
Reverse (-)
36867 .. 37137
271 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_180G00433190.1

Sequence Viewer

Length: 195 bp
ATGGATGAGTTGATGTCCAAGGGAATGCAGAATTCTAACGAGGCTCTTCTTTCTGGATGTTCCGCTGGGGTTCTGGCATCCATGCTACACTATGATGTGTTCTGGGACTTGTTTCCATCCAGTACCACAGTGAAATGTTCCTTGATGTGTAAGGAATTCATGGCTTTTATCAATGTGGAATTTTTGATTGAGTAA

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

4.45

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 1 - 47 8.8e-15 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 63
AcsI RAATTY 3 cut(s) 31, 155, 179
AfaI GTAC 1 cut(s) 124
ApoI RAATTY 3 cut(s) 31, 155, 179
BccI CCATC 1 cut(s) 124
BmsI GCATC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 4 cut(s) 10, 62, 77, 116
BseNI ACTGG 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 51
BstF5I GGATG 4 cut(s) 10, 62, 77, 116
BtsCI GGATG 4 cut(s) 10, 62, 77, 116
BtsIMutI CAGTG 1 cut(s) 135
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 82, 160
CviJI RGCY 2 cut(s) 44, 164
CviKI_1 RGCY 2 cut(s) 44, 164
CviQI GTAC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 18
EcoRI GAATTC 2 cut(s) 31, 155
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 85, 163
FaiI YATR 3 cut(s) 83, 93, 161
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 81, 159
FokI GGATG 4 cut(s) 17, 64, 69, 103
GsaI CCCAGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 85, 163
Hpy188III TCNNGA 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 28
Hsp92II CATG 2 cut(s) 85, 163
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 5 cut(s) 39, 51, 59, 88, 133
LweI GCATC 1 cut(s) 86
MboII GAAGA 1 cut(s) 38
MluCI AATT 3 cut(s) 31, 155, 179
MnlI CCTC 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 30
NlaIII CATG 2 cut(s) 85, 163
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 65
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 51
SfaNI GCATC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 3 cut(s) 31, 155, 179
SsiI CCGC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 130
TasI AATT 3 cut(s) 31, 155, 179
TscAI CASTG 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 1 cut(s) 135
XapI RAATTY 3 cut(s) 31, 155, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.