Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000126

Orthogroup ID

OG0001587

Physical Location & Seq

Genomic Coordinates Forward (+)

4151 .. 6637

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom126g00010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGGTCTTTCTATAATGATGTTGCCATCCTTCAGGGTTTATCAAAAAGTTTGAACAAGGATTGTCTTTCAAGGATGGAACCAGCTAAGTGTCTCTTTCCTGAAGAAGTTATTAAACACATTAATACCCCAGTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGGTACAACATATCTTGATACCTGAAGCAGCAGATCCACATGACTATTGGAGAAAGTGTAAACTGAACATTCACAATTGCATTCCCAGCCAGCTTAAAACACTACATGGTTTCCGTGATTCTATGCTGAAAGCACTGACTGAATTCCAAAAAAATACGGAAGGAGGAATGTTTATAAATTCATGTTATATTCATTGCCAGACGTGGATAACCGAGACATGGCATTCACCCACTTCTCCACGAATAAACAATAAGACAATTGCAGAGTCTGTGGGCGACTGGTACTTTGGTCGAAATGCAGTAAAGCAAATTGACTGTCCATTCCCATGCAATCCCACCTGCTATCATATGAATTTCACTACTTTCTCACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

181

Amino Acids

20.89

Weight (kDa)

8.07

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09405 AT3G09405 AT3G09410 AT3G09410
fragaria_vesca	FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810
malus_domestica	MD04G1127600.v1.1 MD04G1127800.v1.1 MD04G1127900.v1.1 MD04G1128300.v1.1 MD12G1141000.v1.1
prunus_persica	Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1
pyrus_communis	pycom04g11450 pycom04g11460 pycom04g11490 pycom04g11500 pycom04g11580 pycom04g11590 pycom126g00010 pycom126g00060 pycom12g13590
rosa_chinensis	RchiOBHm_Chr3g0466681 RchiOBHm_Chr3g0466741 RchiOBHm_Chr6g0247901
rosa_laevigata	RLG00000024557
rosa_multiflora	Rmu_sc0001726.1_g000008
rosa_roxburghii	Rroxscaffold_180G00433190 Rroxscaffold_6G00403990 Rroxscaffold_6G00414210
rosa_rugosa	Rorug03G0083400.1 Rorug03G0083500
rosa_samantha	Rh3AG130200 Rh3AG130600 Rh3BG151600 Rh3CG151500 Rh3DG152300 Rh6AG044200 Rh6BG038900
rosa_wichuraiana	Rw3G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	2 cut(s)	157, 512
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	3 cut(s)	308, 343, 517
AcuI	CTGAAG	3 cut(s)	17, 123, 210
AfaI	GTAC	2 cut(s)	171, 449
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	55, 72
AjiI	CACGTC	1 cut(s)	369
AluBI	AGCT	3 cut(s)	86, 152, 259
AluI	AGCT	3 cut(s)	86, 152, 259
Alw26I	GTCTC	2 cut(s)	98, 374
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	308, 343, 517
ArsI	GACNNNNNNTTYG	4 cut(s)	434, 466, 466, 498
AseI	ATTAAT	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	384
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BauI	CACGAG	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	35, 70
BcoDI	GTCTC	2 cut(s)	98, 374
BfuAI	ACCTGC	2 cut(s)	157, 512
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmgBI	CACGTC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	131, 449
Bse3DI	GCAATG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	27, 81
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	131, 449
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	2 cut(s)	148, 251
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	98, 374
BsmI	GAATGC	2 cut(s)	246, 388
Bsp143I	GATC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	81
BspMI	ACCTGC	2 cut(s)	157, 512
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	131, 449
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	27, 81
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	98, 374
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	27, 81
BtsIMutI	CAGTG	2 cut(s)	138, 299
BveI	ACCTGC	2 cut(s)	157, 512
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	170, 448
CviAII	CATG	5 cut(s)	206, 272, 348, 384, 492
CviJI	RGCY	4 cut(s)	86, 152, 255, 259
CviKI_1	RGCY	4 cut(s)	86, 152, 255, 259
CviQI	GTAC	2 cut(s)	170, 448
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco57I	CTGAAG	3 cut(s)	17, 123, 210
EcoRI	GAATTC	1 cut(s)	308
FaeI	CATG	5 cut(s)	209, 275, 351, 387, 495
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	5 cut(s)	205, 271, 347, 383, 491
FauNDI	CATATG	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	14, 88
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	2 cut(s)	152, 255
Hin1II	CATG	5 cut(s)	209, 275, 351, 387, 495
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	284, 431
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	2 cut(s)	145, 227
Hpy188III	TCNNGA	3 cut(s)	101, 181, 534
Hpy8I	GTNNAC	2 cut(s)	145, 227
HpyAV	CCTTC	2 cut(s)	41, 320
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	246, 428, 464, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	209, 275, 351, 387, 495
Kzo9I	GATC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	206
MaeII	ACGT	1 cut(s)	368
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	2 cut(s)	241, 423
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	6 cut(s)	241, 308, 343, 423, 474, 517
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	2 cut(s)	323, 530
MseI	TTAA	3 cut(s)	114, 123, 261
MslI	CAYNNNNRTG	1 cut(s)	490
MunI	CAATTG	2 cut(s)	241, 423
Mva1269I	GAATGC	2 cut(s)	246, 388
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	209, 275, 351, 387, 495
NlaIV	GGNNCC	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	512
PctI	GAATGC	2 cut(s)	246, 388
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	341
PspFI	CCCAGC	2 cut(s)	148, 251
PspN4I	GGNNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	171, 449
RsaNI	GTAC	2 cut(s)	170, 448
RseI	CAYNNNNRTG	1 cut(s)	490
SaqAI	TTAA	3 cut(s)	114, 123, 261
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	440
SetI	ASST	9 cut(s)	8, 88, 154, 171, 190, 261, 371, 506, 541
SmiMI	CAYNNNNRTG	1 cut(s)	490
Sse9I	AATT	6 cut(s)	241, 308, 343, 423, 474, 517
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	457
TasI	AATT	6 cut(s)	241, 308, 343, 423, 474, 517
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	114, 123, 261
Tru9I	TTAA	3 cut(s)	114, 123, 261
TscAI	CASTG	2 cut(s)	138, 306
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	336, 347, 530
TspGWI	ACGGA	2 cut(s)	269, 338
TspRI	CASTG	2 cut(s)	138, 306
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	3 cut(s)	308, 343, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.