Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001587

Physical Location & Seq

Genomic Coordinates Forward (+)

14341983 .. 14344269

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTGCTTGTGTGCAGGTATCGTTCTTGACTCTGGAGATGGTGTCAGCCATACAGTCCCTATTTATGAGGGGTATGCTCTTCCACACAATGGAACGGAACTTTTCTTTAGGGGCCGGCTCATCTGGGAAGCAATTATGGATGAACTCTTGTCATTCGGCTTATCAAAAGCGGAACAGGCCCTTCTTTCGGGATGCTCTTCCGGTGGGTTGGCAGCTCTTATACATTGTGATGAATTTCGACATCTTTTGCCTAAGGATGCCACTGTCAAATGTCTAGGCGATGCGGGTTTTTTTCTTGATGAGTATGTTTTATGCATGCCAGTTCCTTCTGCACCAATATCTTTTAGTTTCCGGGGATCTCTGCTGAAGGCGCTGAATGATTTCGAGAAAAATAAGGAAGGAGGAATGTTGATAAGTTCTTGCTTCATTCATTGCCAGACATTGATGACTGAGATATGGAATTCGCCGAAATCTTTAAGGATAAACAACAAGACAATTGCAGAGTCTGTGGGGGACTGGTACTTCAATCGAAGTGCAGCGAAGCTAATAGACTGCCCGTTTCCATGCAATCCGACCTGCTGCAATGTGAATTTCACTCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

202

Amino Acids

22.09

Weight (kDa)

5.34

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09405 AT3G09405 AT3G09410 AT3G09410
fragaria_vesca	FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810
malus_domestica	MD04G1127600.v1.1 MD04G1127800.v1.1 MD04G1127900.v1.1 MD04G1128300.v1.1 MD12G1141000.v1.1
prunus_persica	Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1
pyrus_communis	pycom04g11450 pycom04g11460 pycom04g11490 pycom04g11500 pycom04g11580 pycom04g11590 pycom126g00010 pycom126g00060 pycom12g13590
rosa_chinensis	RchiOBHm_Chr3g0466681 RchiOBHm_Chr3g0466741 RchiOBHm_Chr6g0247901
rosa_laevigata	RLG00000024557
rosa_multiflora	Rmu_sc0001726.1_g000008
rosa_roxburghii	Rroxscaffold_180G00433190 Rroxscaffold_6G00403990 Rroxscaffold_6G00414210
rosa_rugosa	Rorug03G0083400.1 Rorug03G0083500
rosa_samantha	Rh3AG130200 Rh3AG130600 Rh3BG151600 Rh3CG151500 Rh3DG152300 Rh6AG044200 Rh6BG038900
rosa_wichuraiana	Rw3G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	5, 584
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	2 cut(s)	170, 284
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	233, 460, 589
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	89, 187
AgsI	TTSAA	1 cut(s)	526
AluBI	AGCT	2 cut(s)	215, 544
AluI	AGCT	2 cut(s)	215, 544
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	2 cut(s)	112, 177
ApeKI	GCWGC	3 cut(s)	212, 536, 579
ApoI	RAATTY	3 cut(s)	233, 460, 589
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	112, 178
AsuC2I	CCSGG	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	597
AxyI	CCTNAGG	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	224, 548, 566
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	374
BfuAI	ACCTGC	2 cut(s)	5, 584
BisI	GCNGC	3 cut(s)	213, 537, 580
BlsI	GCNGC	3 cut(s)	214, 538, 581
Bme1390I	CCNGG	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	112, 178
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	3 cut(s)	182, 247, 271
BpmI	CTGGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 187
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	320, 521
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	430, 589
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	3 cut(s)	145, 197, 262
BseLI	CCNNNNNNNGG	2 cut(s)	89, 187
BseMI	GCAATG	2 cut(s)	430, 589
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	320, 521
BseXI	GCAGC	3 cut(s)	224, 548, 566
BsgI	GTGCAG	3 cut(s)	33, 315, 555
BshFI	GGCC	2 cut(s)	114, 179
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	115, 201, 352
BslFI	GGGAC	2 cut(s)	41, 527
BslI	CCNNNNNNNGG	2 cut(s)	89, 187
BsmFI	GGGAC	2 cut(s)	41, 527
BsnI	GGCC	2 cut(s)	114, 179
BsoBI	CYCGRG	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	356
BspACI	CCGC	2 cut(s)	170, 284
BspANI	GGCC	2 cut(s)	114, 179
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	113
BspMI	ACCTGC	2 cut(s)	5, 584
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	2 cut(s)	84, 202
BsrDI	GCAATG	2 cut(s)	430, 589
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	320, 521
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	55, 265
Bst6I	CTCTTC	2 cut(s)	84, 202
BstC8I	GCNNGC	2 cut(s)	116, 317
BstDEI	CTNAG	2 cut(s)	252, 450
BstF5I	GGATG	3 cut(s)	145, 197, 262
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 370
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	224, 548, 566
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	114, 179
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	145, 197, 262
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	2 cut(s)	5, 584
Cac8I	GCNNGC	2 cut(s)	116, 317
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	112, 178
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	2 cut(s)	316, 564
CviJI	RGCY	7 cut(s)	48, 114, 118, 159, 179, 215, 544
CviKI_1	RGCY	7 cut(s)	48, 114, 118, 159, 179, 215, 544
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	252, 450
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	84, 202
EarI	CTCTTC	2 cut(s)	84, 202
Eco57I	CTGAAG	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	317
FaeI	CATG	2 cut(s)	319, 567
FaqI	GGGAC	2 cut(s)	41, 527
FatI	CATG	2 cut(s)	315, 563
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	213, 537, 580
FokI	GGATG	3 cut(s)	152, 204, 269
Fsp4HI	GCNGC	3 cut(s)	213, 537, 580
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	213, 537, 580
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	114, 179
HapII	CCGG	3 cut(s)	115, 201, 352
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	319, 567
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	2 cut(s)	29, 503
HpaII	CCGG	3 cut(s)	115, 201, 352
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	6 cut(s)	26, 33, 189, 296, 385, 599
HpyAV	CCTTC	4 cut(s)	191, 336, 361, 392
HpyCH4III	ACNGT	2 cut(s)	55, 265
HpyCH4V	TGCA	7 cut(s)	14, 315, 332, 500, 536, 567, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 370
HpyF3I	CTNAG	2 cut(s)	252, 450
Hsp92II	CATG	2 cut(s)	319, 567
HspAI	GCGC	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	356
LguI	GCTCTTC	2 cut(s)	84, 202
Lsp1109I	GCAGC	3 cut(s)	224, 548, 566
LweI	GCATC	3 cut(s)	182, 247, 271
MaeI	CTAG	1 cut(s)	275
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	2 cut(s)	71, 189
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	5 cut(s)	132, 233, 460, 495, 589
MlyI	GAGTC	2 cut(s)	23, 512
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	2 cut(s)	61, 395
Mph1103I	ATGCAT	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	3 cut(s)	115, 201, 352
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	176, 370
NaeI	GCCGGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	356
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	319, 567
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	597
PciSI	GCTCTTC	2 cut(s)	84, 202
PdiI	GCCGGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	214, 538, 581
PleI	GAGTC	2 cut(s)	23, 511
PpsI	GAGTC	2 cut(s)	23, 511
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	112, 178
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	2 cut(s)	84, 202
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	213, 537, 580
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	2 cut(s)	112, 178
SchI	GAGTC	2 cut(s)	23, 512
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	4 cut(s)	19, 217, 546, 578
SfaNI	GCATC	3 cut(s)	182, 247, 271
Sfr274I	CTCGAG	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	597
SmoI	CTYRAG	1 cut(s)	597
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	5 cut(s)	132, 233, 460, 495, 589
SsiI	CCGC	2 cut(s)	170, 284
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	55, 265
TaqI	TCGA	4 cut(s)	238, 384, 529, 598
TasI	AATT	5 cut(s)	132, 233, 460, 495, 589
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	212, 536, 579
TspDTI	ATGAA	4 cut(s)	156, 246, 415, 419
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	89
XapI	RAATTY	3 cut(s)	233, 460, 589
XceI	RCATGY	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.