Rh6BG038900

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
6375405 .. 6396239
20835 bp
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UTR
Exon/CDS
Intron
Rh6BG038900.1

Sequence Viewer

Length: 696 bp
ATGATTGCTGAGATTTCAAATGGTAGGCAAGATGATGTTGCTGTGCAGTTCCCTAGTTGCATTGAGGTGCAGGAAAAAGCTGGCAAAATTGCTGCAAAGGAGGCTAAACTTAAGGGTAAAAGCACTGTTGATTGTATCCCTTCTGCCAATACAAGGAAAATTGCTTCTAAAAGCAGGAATCCCTTAAAGGATATTTCCAATCAGGGAGGTGGTTCCAAGGGTAGCTCATCCTCCTCAAAATCAAAGAATATTGCTGGAAAAGACATCAAAATATCTAATTCTGAAGCCACTATGGATATTGCGTCATTTTCTTTTATGAAAGGAGTGTTCAAGGGTGGTTCTGTTGATGATCAACCTTTGTCTGGTAATATTCATAATGCCACCCTGAGCAGTTCCAATAATGTGTGTCATAGTAATAGCTCGTTTGATGCTACCTTTGGGCACACGCCTCCTGAGGAGAATATGGAGCAATTTGGAATTAATAAGATTTGGTTAGTTGCTATGGATGAGTTGATGTTCAAGGGAATGCAGAATGCTAACAAGGCTCTTCTTTCTGGATGTTCCGCTGGGGTTCTGGCATCCATGCTACACTGTGATGTGTTCTGGGACTTGTTTCCATCCAGTACCACAGTGAAATGTTCCTTGATGCGTAAGGAATTCATGGCTTTTATCGACGTGGAATTTTTGATTGAGTAA

Protein Analysis

231

Amino Acids

24.82

Weight (kDa)

6.89

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 157 - 213 1.2e-17 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 564
AcsI RAATTY 2 cut(s) 656, 680
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 153, 362
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 18, 331, 520
AjiI CACGTC 1 cut(s) 676
AluBI AGCT 3 cut(s) 80, 225, 420
AluI AGCT 3 cut(s) 80, 225, 420
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 656, 680
AseI ATTAAT 1 cut(s) 480
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 625
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 349
BfaI CTAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 676
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 3 cut(s) 418, 587, 636
Bpu10I CCTNAGC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 362
Bse1I ACTGG 1 cut(s) 621
Bse21I CCTNAGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 5 cut(s) 227, 511, 563, 578, 617
BseLI CCNNNNNNNGG 2 cut(s) 153, 362
BseMII CTCAG 2 cut(s) 377, 444
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 2 cut(s) 223, 470
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 2 cut(s) 65, 89
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 153, 362
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 2 cut(s) 531, 538
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 564
BspCNI CTCAG 2 cut(s) 378, 445
BspLI GGNNCC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 110
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 127, 593, 631
Bst6I CTCTTC 1 cut(s) 552
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 9, 386, 453
BstF5I GGATG 5 cut(s) 227, 511, 563, 578, 617
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 101, 542
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 1 cut(s) 146
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 5 cut(s) 227, 511, 563, 578, 617
BtsIMutI CAGTG 3 cut(s) 123, 589, 636
Cac8I GCNNGC 1 cut(s) 82
CseI GACGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 624
CviAII CATG 2 cut(s) 583, 661
CviJI RGCY 7 cut(s) 80, 104, 225, 287, 420, 545, 665
CviKI_1 RGCY 7 cut(s) 80, 104, 225, 287, 420, 545, 665
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 3 cut(s) 9, 386, 453
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 586, 664
FaiI YATR 8 cut(s) 293, 317, 375, 411, 464, 503, 584, 662
FaqI GGGAC 1 cut(s) 620
FatI CATG 2 cut(s) 582, 660
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 5 cut(s) 214, 518, 565, 570, 604
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 570
HgaI GACGC 1 cut(s) 291
Hin1II CATG 2 cut(s) 586, 664
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 452, 555
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 3 cut(s) 127, 593, 631
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 5 cut(s) 46, 60, 70, 95, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 542
HpyF3I CTNAG 3 cut(s) 9, 386, 453
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 2 cut(s) 586, 664
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 3 cut(s) 418, 587, 636
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 675
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 7 cut(s) 87, 159, 277, 470, 477, 656, 680
MnlI CCTC 7 cut(s) 58, 94, 200, 241, 244, 448, 459
MseI TTAA 3 cut(s) 111, 185, 480
MslI CAYNNNNRTG 2 cut(s) 65, 594
MspA1I CMGCKG 1 cut(s) 566
MspCI CTTAAG 1 cut(s) 110
Mva1269I GAATGC 2 cut(s) 531, 538
MwoI GCNNNNNNNGC 2 cut(s) 101, 542
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 586, 664
NlaIV GGNNCC 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 552
PctI GAATGC 2 cut(s) 531, 538
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 566
PspN4I GGNNCC 1 cut(s) 214
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 2 cut(s) 65, 594
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 3 cut(s) 111, 185, 480
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 444
SetI ASST 8 cut(s) 69, 82, 211, 227, 358, 422, 437, 678
SfaNI GCATC 3 cut(s) 418, 587, 636
SmiMI CAYNNNNRTG 2 cut(s) 65, 594
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 7 cut(s) 87, 159, 277, 470, 477, 656, 680
SsiI CCGC 1 cut(s) 564
SspI AATATT 2 cut(s) 250, 370
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 127, 593, 631
TaiI ACGT 1 cut(s) 678
TaqI TCGA 1 cut(s) 672
TasI AATT 7 cut(s) 87, 159, 277, 470, 477, 656, 680
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 111, 185, 480
Tru9I TTAA 3 cut(s) 111, 185, 480
TscAI CASTG 3 cut(s) 130, 596, 636
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 332, 362, 649
TspRI CASTG 3 cut(s) 130, 596, 636
Vha464I CTTAAG 1 cut(s) 110
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 656, 680
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.