Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001587

Physical Location & Seq

Genomic Coordinates Forward (+)

14460515 .. 14461186

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAATCAGCGGGCATTACCTGCAGCATCACTAGTTTCCGGGGATCTCTGCTGAAGGCGCTGAATGATTTCGAGAAAAATAAGGAAGGAGGAATGTTTATAAGTTCTTGCTTCATTCATTGCCAGACATTGATGACTGAGATATGGAATTCGCCGAAATCTTTAAGGATAAACAACAAGACAATTGCAGAGTCTGTGGGGGACTGGTACTTCAATCGAAGTGCAGCGAAGCTAATAGACTGCCCGTTTCCATGCAATCCGACCTGCTACAATGTGAATTTCACTCGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

8.6

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09405 AT3G09405 AT3G09410 AT3G09410
fragaria_vesca	FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810 FvH4_6g13810
malus_domestica	MD04G1127600.v1.1 MD04G1127800.v1.1 MD04G1127900.v1.1 MD04G1128300.v1.1 MD12G1141000.v1.1
prunus_persica	Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254300_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1 Prupe.6G254500_v2.0.a1
pyrus_communis	pycom04g11450 pycom04g11460 pycom04g11490 pycom04g11500 pycom04g11580 pycom04g11590 pycom126g00010 pycom126g00060 pycom12g13590
rosa_chinensis	RchiOBHm_Chr3g0466681 RchiOBHm_Chr3g0466741 RchiOBHm_Chr6g0247901
rosa_laevigata	RLG00000024557
rosa_multiflora	Rmu_sc0001726.1_g000008
rosa_roxburghii	Rroxscaffold_180G00433190 Rroxscaffold_6G00403990 Rroxscaffold_6G00414210
rosa_rugosa	Rorug03G0083400.1 Rorug03G0083500
rosa_samantha	Rh3AG130200 Rh3AG130600 Rh3BG151600 Rh3CG151500 Rh3DG152300 Rh6AG044200 Rh6BG038900
rosa_wichuraiana	Rw3G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
Acc36I	ACCTGC	2 cut(s)	29, 272
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	148, 277
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	24, 224
ApoI	RAATTY	2 cut(s)	148, 277
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	36, 236
BcnI	CCSGG	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	29, 272
BisI	GCNGC	2 cut(s)	25, 225
BlsI	GCNGC	2 cut(s)	26, 226
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	36, 236
BsgI	GTGCAG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	26
BspMI	ACCTGC	2 cut(s)	29, 272
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 58
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	36, 236
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BveI	ACCTGC	2 cut(s)	29, 272
Cac8I	GCNNGC	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	1 cut(s)	232
CviKI_1	RGCY	1 cut(s)	232
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	255
FaiI	YATR	3 cut(s)	101, 145, 253
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	251
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	25, 225
Fsp4HI	GCNGC	2 cut(s)	25, 225
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	25, 225
HaeII	RGCGCY	1 cut(s)	62
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	49, 80
HpyCH4V	TGCA	5 cut(s)	4, 24, 188, 224, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 58
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	34, 53, 137, 190, 277
Lsp1109I	GCAGC	2 cut(s)	36, 236
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	33
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	3 cut(s)	148, 183, 277
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	83, 281
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	21, 58
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	26, 226
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	25, 225
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	4 cut(s)	23, 234, 266, 292
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	3 cut(s)	148, 183, 277
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	39
TaqI	TCGA	3 cut(s)	72, 217, 286
TasI	AATT	3 cut(s)	148, 183, 277
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	2 cut(s)	24, 224
TspDTI	ATGAA	2 cut(s)	103, 107
XapI	RAATTY	2 cut(s)	148, 277
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.