Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

31114836 .. 31116955

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1231800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAACGAGGGCGTGGAGGGTCCGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCCGCCACCGTGAACTGCGCCGACAACACCGGTGCCAAGAACCTTTACATCATCTCTGTGAAGGGAATCAAGGGTCGCCTCAATCGCCTTCCTTCTGCTTGTGTTGGTGACATGGTCATGGCTACAGTCAAGAAGGGCAAGCCTGACCTCCGAAAGAAGGTCTTGCCGGCCGTCATTGTCCGCCAGCGCAAGCCGTGGCGCCGAAAGGATGGGGTTTTCATGTACTTTGAAGATAATGCTGGTGTCATTGTCAATCCGAAGGGAGAAATGAAGGGTTCTGCAATCACCGGACCTATAGGAAAGGAATGCGCAGATCTGTGGCCAAGAATTGCAAGTGCTGCCAATGCCATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

141

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	376
AccB1I	GGYRCC	2 cut(s)	98, 264
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	3 cut(s)	27, 69, 247
AcoI	YGGCCR	3 cut(s)	66, 234, 386
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	3 cut(s)	66, 234, 386
ApeKI	GCWGC	1 cut(s)	404
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	4 cut(s)	86, 255, 267, 377
AspS9I	GGNCC	2 cut(s)	24, 356
AsuHPI	GGTGA	2 cut(s)	185, 343
AvaII	GGWCC	2 cut(s)	24, 356
BalI	TGGCCA	1 cut(s)	388
BanI	GGYRCC	2 cut(s)	98, 264
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	269, 422
BceAI	ACGGC	2 cut(s)	221, 244
BfmI	CTRYAG	2 cut(s)	189, 360
BfoI	RGCGCY	1 cut(s)	268
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	2 cut(s)	69, 405
BlsI	GCNGC	2 cut(s)	70, 406
Bme18I	GGWCC	2 cut(s)	24, 356
BmgT120I	GGNCC	2 cut(s)	24, 356
BmiI	GGNNCC	3 cut(s)	25, 100, 266
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	3 cut(s)	42, 95, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	3 cut(s)	61, 95, 232
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	51, 280
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	68, 236, 388
BshNI	GGYRCC	2 cut(s)	98, 264
BshTI	ACCGGT	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	6 cut(s)	30, 43, 62, 96, 233, 354
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	68, 236, 388
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	3 cut(s)	27, 69, 247
BspANI	GGCC	3 cut(s)	68, 236, 388
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	25, 100, 266
BspT107I	GGYRCC	2 cut(s)	98, 264
BsrFI	RCCGGY	3 cut(s)	61, 95, 232
BssAI	RCCGGY	3 cut(s)	61, 95, 232
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	76, 193
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	206, 234, 251, 257
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	51, 280
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	4 cut(s)	86, 255, 267, 377
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
BstSFI	CTRYAG	2 cut(s)	189, 360
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	68, 236, 388
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	51, 280
Cac8I	GCNNGC	4 cut(s)	206, 234, 251, 257
CfoI	GCGC	4 cut(s)	86, 255, 267, 377
Cfr10I	RCCGGY	3 cut(s)	61, 95, 232
Cfr13I	GGNCC	2 cut(s)	24, 356
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	178, 184, 286
CviJI	RGCY	6 cut(s)	68, 188, 208, 236, 259, 388
CviKI_1	RGCY	6 cut(s)	68, 188, 208, 236, 259, 388
CviQI	GTAC	1 cut(s)	289
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EaeI	YGGCCR	3 cut(s)	66, 234, 386
EagI	CGGCCG	1 cut(s)	234
EciI	GGCGGA	2 cut(s)	16, 236
EclXI	CGGCCG	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	24, 356
Eco52I	CGGCCG	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	3 cut(s)	181, 187, 289
FaiI	YATR	4 cut(s)	179, 185, 287, 362
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	3 cut(s)	177, 183, 285
Fnu4HI	GCNGC	2 cut(s)	69, 405
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	2 cut(s)	69, 405
FspI	TGCGCA	1 cut(s)	376
GlaI	GCGC	4 cut(s)	85, 254, 266, 376
GluI	GCNGC	2 cut(s)	69, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	3 cut(s)	68, 236, 388
HapII	CCGG	6 cut(s)	30, 43, 62, 96, 233, 354
HhaI	GCGC	4 cut(s)	86, 255, 267, 377
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	181, 187, 289
Hin6I	GCGC	4 cut(s)	84, 253, 265, 375
HinP1I	GCGC	4 cut(s)	84, 253, 265, 375
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	6 cut(s)	30, 43, 62, 96, 233, 354
HphI	GGTGA	2 cut(s)	185, 343
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	218, 324
Hpy188III	TCNNGA	2 cut(s)	43, 196
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	7 cut(s)	121, 164, 168, 193, 217, 319, 331
HpyCH4III	ACNGT	2 cut(s)	76, 193
HpyCH4V	TGCA	2 cut(s)	347, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	181, 187, 289
HspAI	GCGC	4 cut(s)	84, 253, 265, 375
KasI	GGCGCC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	1 cut(s)	308
MflI	RGATCY	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	388
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	5, 14, 155, 224
Mox20I	TGGCCA	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	42
MroNI	GCCGGC	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	1 cut(s)	421
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	388
MspI	CCGG	6 cut(s)	30, 43, 62, 96, 233, 354
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
NaeI	GCCGGC	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	265
NdeII	GATC	1 cut(s)	379
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	181, 187, 289
NlaIV	GGNNCC	3 cut(s)	25, 100, 266
NmuCI	GTSAC	1 cut(s)	173
NsbI	TGCGCA	1 cut(s)	376
PctI	GAATGC	1 cut(s)	377
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	70, 406
PluTI	GGCGCC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	25, 100, 266
PspPI	GGNCC	2 cut(s)	24, 356
PsuI	RGATCY	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SaqAI	TTAA	1 cut(s)	421
SatI	GCNGC	2 cut(s)	69, 405
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	24, 356
SetI	ASST	4 cut(s)	111, 216, 228, 361
SfcI	CTRYAG	2 cut(s)	189, 360
SfoI	GGCGCC	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	24, 356
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	3 cut(s)	27, 69, 247
SspDI	GGCGCC	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	76, 193
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	274, 350
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	24, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.