Rh2CG609900

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001168
Physical Location & Seq
Forward (+)
78689018 .. 78689544
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG609900.1

Sequence Viewer

Length: 240 bp
ATGATATCATGCAAAGAAAGACTCAATTTTGACATATGCCATCAAGTTGGATCTCAGACCATGTCGAAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTTTTCATGTACTTCGAAGATAATGCTGGTGTCGTTGTGAATCCAAAGGGTGAAATGAAAGGATCTGCTATCACTGGGCCTATTGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCAGCTAATGCCATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

9.22

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 22 - 79 4.1e-18 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AclWI GGATC 2 cut(s) 58, 166
AcoI YGGCCR 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 107
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 2 cut(s) 58, 166
AoxI GGCC 2 cut(s) 173, 203
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 3 cut(s) 72, 84, 194
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 111
BalI TGGCCA 1 cut(s) 205
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 48, 86
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BfaI CTAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 175, 205
BshNI GGYRCC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 2 cut(s) 175, 205
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 3 cut(s) 50, 158, 196
BspANI GGCC 2 cut(s) 175, 205
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 58, 166
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 50, 158, 196
BssNI GRCGYC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 3 cut(s) 72, 84, 194
BstKTI GATC 3 cut(s) 53, 161, 199
BstMBI GATC 3 cut(s) 50, 158, 196
BstMWI GCNNNNNNNGC 2 cut(s) 221, 227
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 2 cut(s) 50, 158
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 2 cut(s) 50, 158
BsuRI GGCC 2 cut(s) 175, 205
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 3 cut(s) 72, 84, 194
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 106
CviAII CATG 3 cut(s) 9, 61, 103
CviJI RGCY 4 cut(s) 76, 175, 205, 224
CviKI_1 RGCY 4 cut(s) 76, 175, 205, 224
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 54
DinI GGCGCC 1 cut(s) 83
DpnI GATC 3 cut(s) 52, 160, 198
DpnII GATC 3 cut(s) 50, 158, 196
EaeI YGGCCR 1 cut(s) 203
Eco32I GATATC 1 cut(s) 6
EcoRV GATATC 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 3 cut(s) 12, 64, 106
FaiI YATR 6 cut(s) 10, 35, 37, 62, 104, 233
FatI CATG 3 cut(s) 8, 60, 102
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 216
GlaI GCGC 3 cut(s) 71, 83, 193
GluI GCNGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 175, 205
HhaI GCGC 3 cut(s) 72, 84, 194
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 3 cut(s) 12, 64, 106
Hin6I GCGC 3 cut(s) 70, 82, 192
HinP1I GCGC 3 cut(s) 70, 82, 192
HinfI GANTC 2 cut(s) 21, 136
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 12, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 227
HpyF3I CTNAG 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 3 cut(s) 12, 64, 106
HspAI GCGC 3 cut(s) 70, 82, 192
KasI GGCGCC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 50, 158, 196
LpnPI CCDG 2 cut(s) 108, 156
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 216
MalI GATC 3 cut(s) 52, 160, 198
MboI GATC 3 cut(s) 50, 158, 196
MboII GAAGA 1 cut(s) 125
MflI RGATCY 2 cut(s) 50, 158
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 2 cut(s) 25, 210
MluNI TGGCCA 1 cut(s) 205
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 28
Mox20I TGGCCA 1 cut(s) 205
MscI TGGCCA 1 cut(s) 205
MseI TTAA 1 cut(s) 238
Msp20I TGGCCA 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 221, 227
NarI GGCGCC 1 cut(s) 82
NdeI CATATG 1 cut(s) 35
NdeII GATC 3 cut(s) 50, 158, 196
NlaIII CATG 3 cut(s) 12, 64, 106
NlaIV GGNNCC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 111
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 136
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 50, 158
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 3 cut(s) 50, 158, 196
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 15
SetI ASST 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 111
Sse9I AATT 2 cut(s) 25, 210
SspDI GGCGCC 1 cut(s) 81
SspMI CTAG 1 cut(s) 216
TaqI TCGA 2 cut(s) 65, 111
TasI AATT 2 cut(s) 25, 210
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 91, 167
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 61
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.