Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

8311109 .. 8313773

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG053100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGACGCGGAGGATCGGCTGGGAACAAGTTCAGGATGTCACTGGGTCTACCGGTGGCGGCGACGGTGAACTGTGCTGACAATACAGGGGCGAAGAACCTGTACATCATCTCAGTGAAGGGAATCAAGGGTCGTCTGAATCGGTTGCCGTCTGCTTGCGTCGGTGACATGGTCATGGCCACTGTCAAGAAGGGTAAGCCTGATTTGAGGAAGAAGGTCCTCCCGGCTGTCATTGTCAGGCAGCGCAAGCCCTGGCGCCGAAAGGATGGTGTCTTCATGTACTTCGAAGATAATGCTGGTGTTATTGTCAATCCAAAGGGAGAAATGAAAGGGTCTGCAATTACTGGTCCTATTGGGAAGGAGTGTGCTGATCTATGGCCAAGGATTGCCAGTGCTGCTAATGCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	58
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	18, 68
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	186, 386
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	2 cut(s)	113, 290
AgeI	ACCGGT	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	260
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	186, 386
ApeKI	GCWGC	2 cut(s)	250, 404
AsiGI	ACCGGT	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	255, 267
AspS9I	GGNCC	2 cut(s)	226, 356
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	88, 185
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	2 cut(s)	226, 356
BalI	TGGCCA	2 cut(s)	188, 388
BanI	GGYRCC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	262, 391
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	3 cut(s)	69, 251, 405
BlsI	GCNGC	3 cut(s)	70, 252, 406
Bme1390I	CCNGG	2 cut(s)	233, 262
Bme18I	GGWCC	2 cut(s)	226, 356
BmgT120I	GGNCC	2 cut(s)	226, 356
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	233, 262
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	260, 389
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	57, 358, 399
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	260, 389
BseGI	GGATG	2 cut(s)	51, 280
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	57, 358, 399
BseXI	GCAGC	2 cut(s)	262, 391
BseYI	CCCAGC	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	188, 388
BshNI	GGYRCC	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	62, 233
BsnI	GGCC	2 cut(s)	188, 388
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	23, 379
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	2 cut(s)	188, 388
BspCNI	CTCAG	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	57, 358, 399
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	260, 389
BssMI	GATC	2 cut(s)	23, 379
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	76, 83, 193
BstACI	GRCGYC	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	166, 257
BstDEI	CTNAG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	51, 280
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	255, 267
BstKTI	GATC	2 cut(s)	26, 382
BstMBI	GATC	2 cut(s)	23, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	231, 260
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	262, 391
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	188, 388
BtsCI	GGATG	2 cut(s)	51, 280
BtsIMutI	CAGTG	4 cut(s)	50, 129, 189, 406
Cac8I	GCNNGC	2 cut(s)	166, 257
CfoI	GCGC	2 cut(s)	255, 267
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	226, 356
CseI	GACGC	2 cut(s)	24, 157
Csp6I	GTAC	2 cut(s)	112, 289
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	3 cut(s)	178, 184, 286
CviJI	RGCY	6 cut(s)	29, 188, 208, 236, 259, 388
CviKI_1	RGCY	6 cut(s)	29, 188, 208, 236, 259, 388
CviQI	GTAC	2 cut(s)	112, 289
DdeI	CTNAG	1 cut(s)	121
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	2 cut(s)	25, 381
DpnII	GATC	2 cut(s)	23, 379
EaeI	YGGCCR	2 cut(s)	186, 386
Eco130I	CCWWGG	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	226, 356
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	389
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	181, 187, 289
FaiI	YATR	4 cut(s)	179, 185, 287, 385
FatI	CATG	3 cut(s)	177, 183, 285
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	69, 251, 405
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	3 cut(s)	69, 251, 405
GlaI	GCGC	2 cut(s)	254, 266
GluI	GCNGC	3 cut(s)	69, 251, 405
GsaI	CCCAGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	188, 388
HapII	CCGG	2 cut(s)	62, 233
HgaI	GACGC	2 cut(s)	24, 157
HhaI	GCGC	2 cut(s)	255, 267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	181, 187, 289
Hin6I	GCGC	2 cut(s)	253, 265
HinP1I	GCGC	2 cut(s)	253, 265
HinfI	GANTC	2 cut(s)	132, 148
HpaII	CCGG	2 cut(s)	62, 233
HphI	GGTGA	2 cut(s)	88, 185
Hpy166II	GTNNAC	2 cut(s)	59, 79
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	43, 196
Hpy8I	GTNNAC	2 cut(s)	59, 79
Hpy99I	CGWCG	2 cut(s)	76, 173
HpyAV	CCTTC	4 cut(s)	121, 193, 217, 361
HpyCH4III	ACNGT	3 cut(s)	76, 83, 193
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
HpyF3I	CTNAG	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	181, 187, 289
HspAI	GCGC	2 cut(s)	253, 265
KasI	GGCGCC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	23, 379
Lsp1109I	GCAGC	2 cut(s)	262, 391
MaeIII	GTNAC	2 cut(s)	48, 173
MalI	GATC	2 cut(s)	25, 381
MboI	GATC	2 cut(s)	23, 379
MboII	GAAGA	4 cut(s)	115, 232, 274, 308
MlsI	TGGCCA	2 cut(s)	188, 388
MluCI	AATT	1 cut(s)	348
MluNI	TGGCCA	2 cut(s)	188, 388
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	5, 14, 210, 239
Mox20I	TGGCCA	2 cut(s)	188, 388
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	2 cut(s)	188, 388
MseI	TTAA	1 cut(s)	421
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	2 cut(s)	188, 388
MspI	CCGG	2 cut(s)	62, 233
MspR9I	CCNGG	2 cut(s)	233, 262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
NarI	GGCGCC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	23, 379
NlaIII	CATG	3 cut(s)	181, 187, 289
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	2 cut(s)	48, 173
NspV	TTCGAA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	132, 148
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	70, 252, 406
PluTI	GGCGCC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	226, 356
PspPPI	RGGWCCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	113, 290
RsaNI	GTAC	2 cut(s)	112, 289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SaqAI	TTAA	1 cut(s)	421
SatI	GCNGC	3 cut(s)	69, 251, 405
Sau3AI	GATC	2 cut(s)	23, 379
Sau96I	GGNCC	2 cut(s)	226, 356
ScrFI	CCNGG	2 cut(s)	233, 262
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	2 cut(s)	226, 356
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	18, 68
SspDI	GGCGCC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	231, 260
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	3 cut(s)	76, 83, 193
TaqI	TCGA	2 cut(s)	5, 294
TasI	AATT	1 cut(s)	348
TatI	WGTACW	2 cut(s)	111, 288
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	132, 148
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TscAI	CASTG	4 cut(s)	57, 129, 196, 406
TseFI	GTSAC	2 cut(s)	48, 173
TseI	GCWGC	2 cut(s)	250, 404
Tsp45I	GTSAC	2 cut(s)	48, 173
TspDTI	ATGAA	2 cut(s)	274, 350
TspRI	CASTG	4 cut(s)	57, 129, 196, 406
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	226, 356
XmiI	GTMKAC	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.