Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

9108569 .. 9109223

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTCATAGGCACTGTCAAGAAGGGTAAGCCTGATCTGATGAAGAAGGTCCTGCCAGCTGTCATTTGGAGGCAGTGCAAGCCATGGCACCAAAAGGACGGTGTCTTCATGTACTTCGAAGATAATGCTGGTGTTATTGTTAATCCGAAGGGAGAAATGAAAGGATCTGCAATTACTGGTCTTATTGGGAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCCAGTGCTGCAAATGCTATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070180 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

81

Amino Acids

8.87

Weight (kDa)

9.47

Isoelectric Point (pI)

15.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	1 - 81	3.6e-22	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	113
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	227
AspA2I	CCTAGG	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	228
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	83, 212
Bse1I	ACTGG	2 cut(s)	181, 222
BseDI	CCNNGG	2 cut(s)	83, 212
BseNI	ACTGG	2 cut(s)	181, 222
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	34, 164, 202
Bsp19I	CCATGG	1 cut(s)	83
BspANI	GGCC	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	181, 222
BssECI	CCNNGG	2 cut(s)	83, 212
BssMI	GATC	3 cut(s)	34, 164, 202
BssT1I	CCWWGG	2 cut(s)	83, 212
Bst4CI	ACNGT	2 cut(s)	16, 101
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	57, 80
BstDSI	CCRYGG	1 cut(s)	83
BstKTI	GATC	3 cut(s)	37, 167, 205
BstMBI	GATC	3 cut(s)	34, 164, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 227, 233
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	12, 80, 229
Cac8I	GCNNGC	2 cut(s)	57, 80
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	84, 109
CviJI	RGCY	4 cut(s)	31, 59, 82, 211
CviKI_1	RGCY	4 cut(s)	31, 59, 82, 211
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	3 cut(s)	36, 166, 204
DpnII	GATC	3 cut(s)	34, 164, 202
Eco130I	CCWWGG	2 cut(s)	83, 212
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	83, 212
ErhI	CCWWGG	2 cut(s)	83, 212
FaeI	CATG	2 cut(s)	87, 112
FaiI	YATR	3 cut(s)	8, 85, 110
FatI	CATG	2 cut(s)	83, 108
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	87, 112
Hpy188I	TCNGA	2 cut(s)	39, 147
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	16, 40, 142, 184
HpyCH4III	ACNGT	2 cut(s)	16, 101
HpyCH4V	TGCA	3 cut(s)	78, 170, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 227, 233
Hsp92II	CATG	2 cut(s)	87, 112
Kzo9I	GATC	3 cut(s)	34, 164, 202
LpnPI	CCDG	6 cut(s)	45, 65, 69, 114, 162, 235
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	213
MalI	GATC	3 cut(s)	36, 166, 204
MboI	GATC	3 cut(s)	34, 164, 202
MboII	GAAGA	3 cut(s)	55, 97, 131
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	141, 244
MspA1I	CMGCKG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	79, 227, 233
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	34, 164, 202
NlaIII	CATG	2 cut(s)	87, 112
NlaIV	GGNNCC	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	141, 244
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	34, 164, 202
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	2 cut(s)	51, 61
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	171
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	83, 212
TaaI	ACNGT	2 cut(s)	16, 101
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	141, 244
Tru9I	TTAA	2 cut(s)	141, 244
TscAI	CASTG	3 cut(s)	19, 80, 229
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	56, 97, 173
TspRI	CASTG	3 cut(s)	19, 80, 229
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XmaJI	CCTAGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.