Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

49367103 .. 49368455

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGGAGGGGAGGATCGGCCGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGATCAACTGCGCCGACAACACCGGAGCCAAGAACCTCTACATCATATCCGTGAAGGGGATCAAGGGGCGCCTCAACCGTCTGCCGTCGGCCTGCGTCGGCGACATGGTGATGGCCACCGTGAAGAAGGGAAAGCCGGATCTGAGGAAGAAGGTGCTGCCGGCCGTGGTGGTCCGTCAGCGCAAGCCCTGGCGCCGAAAGGACGGAGTGTTCATGTACTTTGAGGACAACGCCGGCGTGATTGTGAACCCCAAGGGAGAGATGAAGGGGTCGGCTATTACTGGGCCGATCGGGAAGGAGTGCGCGGATCTCTGGCCCAGAATTGCAAGTGCTGCCAATGCTATCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AccII	CGCG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	68, 377
AclWI	GGATC	4 cut(s)	31, 140, 219, 387
AcoI	YGGCCR	3 cut(s)	27, 186, 234
AcyI	GRCGYC	2 cut(s)	142, 265
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	4 cut(s)	31, 140, 219, 387
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	6 cut(s)	27, 162, 186, 234, 356, 386
ApeKI	GCWGC	2 cut(s)	229, 404
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	5 cut(s)	86, 144, 255, 267, 377
AspS9I	GGNCC	3 cut(s)	244, 356, 387
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	141, 264
BbvI	GCAGC	2 cut(s)	216, 391
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	142, 221
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	2 cut(s)	145, 268
BisI	GCNGC	3 cut(s)	69, 230, 405
BlsI	GCNGC	3 cut(s)	70, 231, 406
Bme1390I	CCNGG	2 cut(s)	31, 262
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	244, 356, 387
BmiI	GGNNCC	3 cut(s)	100, 143, 266
BmrFI	CCNGG	2 cut(s)	31, 262
BmrI	ACTGGG	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	142, 265
BsaJI	CCNNGG	3 cut(s)	237, 260, 324
BsaWI	WCCGGW	2 cut(s)	42, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	3 cut(s)	61, 232, 305
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	237, 260, 324
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	27, 234
BseXI	GCAGC	2 cut(s)	216, 391
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	3 cut(s)	30, 237, 363
BshFI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BshNI	GGYRCC	2 cut(s)	141, 264
BsiEI	CGRYCG	3 cut(s)	30, 237, 363
BsiSI	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BspACI	CCGC	2 cut(s)	68, 377
BspANI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BspCNI	CTCAG	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	100, 143, 266
BspPI	GGATC	4 cut(s)	31, 140, 219, 387
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrFI	RCCGGY	3 cut(s)	61, 232, 305
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	3 cut(s)	61, 232, 305
BssECI	CCNNGG	3 cut(s)	237, 260, 324
BssMI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BssNI	GRCGYC	2 cut(s)	142, 265
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	152, 193
BstACI	GRCGYC	2 cut(s)	142, 265
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	166, 234, 257, 307
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	2 cut(s)	145, 268
BstHHI	GCGC	5 cut(s)	86, 144, 255, 267, 377
BstKTI	GATC	6 cut(s)	26, 78, 135, 214, 363, 382
BstMBI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BstMCI	CGRYCG	3 cut(s)	30, 237, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	29, 260
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	216, 391
BstX2I	RGATCY	2 cut(s)	211, 379
BstYI	RGATCY	2 cut(s)	211, 379
BstZI	CGGCCG	2 cut(s)	27, 234
BsuRI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	166, 234, 257, 307
CfoI	GCGC	5 cut(s)	86, 144, 255, 267, 377
Cfr10I	RCCGGY	3 cut(s)	61, 232, 305
Cfr13I	GGNCC	3 cut(s)	244, 356, 387
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	178, 286
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	2 cut(s)	143, 266
DpnI	GATC	6 cut(s)	25, 77, 134, 213, 362, 381
DpnII	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
EaeI	YGGCCR	3 cut(s)	27, 186, 234
EagI	CGGCCG	2 cut(s)	27, 234
EclXI	CGGCCG	2 cut(s)	27, 234
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	2 cut(s)	27, 234
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	2 cut(s)	143, 266
EheI	GGCGCC	2 cut(s)	143, 266
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	181, 289
FaiI	YATR	3 cut(s)	119, 179, 287
FatI	CATG	2 cut(s)	177, 285
Fnu4HI	GCNGC	3 cut(s)	69, 230, 405
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	69, 230, 405
GlaI	GCGC	5 cut(s)	85, 143, 254, 266, 376
GluI	GCNGC	3 cut(s)	69, 230, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	145, 268
HaeIII	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
HapII	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	5 cut(s)	86, 144, 255, 267, 377
Hin1I	GRCGYC	2 cut(s)	142, 265
Hin1II	CATG	2 cut(s)	181, 289
Hin6I	GCGC	5 cut(s)	84, 142, 253, 265, 375
HinP1I	GCGC	5 cut(s)	84, 142, 253, 265, 375
HpaII	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	216, 422
Hpy188III	TCNNGA	2 cut(s)	43, 364
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	3 cut(s)	76, 163, 173
HpyAV	CCTTC	5 cut(s)	121, 193, 217, 331, 361
HpyCH4III	ACNGT	2 cut(s)	152, 193
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	142, 265
Hsp92II	CATG	2 cut(s)	181, 289
HspAI	GCGC	5 cut(s)	84, 142, 253, 265, 375
KasI	GGCGCC	2 cut(s)	141, 264
Kpn2I	TCCGGA	1 cut(s)	42
KroI	GCCGGC	2 cut(s)	232, 305
KroNI	GCCGGC	2 cut(s)	234, 307
Kzo9I	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	216, 391
MalI	GATC	6 cut(s)	25, 77, 134, 213, 362, 381
MboI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	2 cut(s)	211, 379
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	2 cut(s)	142, 265
MnlI	CCTC	7 cut(s)	5, 9, 14, 119, 155, 210, 289
Mox20I	TGGCCA	1 cut(s)	188
MreI	CGCCGGCG	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	42
MroNI	GCCGGC	2 cut(s)	232, 305
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
MspR9I	CCNGG	2 cut(s)	31, 262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
NaeI	GCCGGC	2 cut(s)	234, 307
NarI	GGCGCC	2 cut(s)	142, 265
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
NgoMIV	GCCGGC	2 cut(s)	232, 305
NlaIII	CATG	2 cut(s)	181, 289
NlaIV	GGNNCC	3 cut(s)	100, 143, 266
PdiI	GCCGGC	2 cut(s)	234, 307
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	70, 231, 406
Ple19I	CGATCG	1 cut(s)	363
PluTI	GGCGCC	2 cut(s)	145, 268
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	100, 143, 266
PspPI	GGNCC	3 cut(s)	244, 356, 387
PsuI	RGATCY	2 cut(s)	211, 379
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	3 cut(s)	69, 230, 405
Sau3AI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
Sau96I	GGNCC	3 cut(s)	244, 356, 387
ScrFI	CCNGG	2 cut(s)	31, 262
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	2 cut(s)	143, 266
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	68, 377
SspDI	GGCGCC	2 cut(s)	141, 264
StyD4I	CCNGG	2 cut(s)	29, 260
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	152, 193
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	229, 404
TspDTI	ATGAA	2 cut(s)	274, 350
TspGWI	ACGGA	3 cut(s)	112, 236, 291
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.