Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

11436041 .. 11437294

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTCATGCCTACTGTCAGGAAGGGCAAGCTCGACCTCCGAAAGAAGGTCTTGTCGGCCGTCATTGTCCTCCAGCGCAAGCGGTGGCGCCGAAAGGACGGTGTTTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCGAAGGGAGAAATGAAAGACCTATCGGAAAGGAATGTGCAGATCTGTGGCCTAGAATTGCGAGTGCTACCAATGGCATCGTTTAAGTTCTCCACTTTCCTGTCTTTAGGATGTTTTTGCTGGTTTTCTGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070180 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

94

Amino Acids

10.78

Weight (kDa)

9.96

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	1 - 54	4.2e-14	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AoxI	GGCC	2 cut(s)	57, 193
AspLEI	GCGC	2 cut(s)	78, 90
BanI	GGYRCC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseX3I	CGGCCG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 195
BshNI	GGYRCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	59, 195
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	59, 195
BspLI	GGNNCC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	87
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	16, 101
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	29, 80
BstF5I	GGATG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	78, 90
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 195
BtsCI	GGATG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	29, 80
CfoI	GCGC	2 cut(s)	78, 90
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	7, 109
CviJI	RGCY	3 cut(s)	31, 59, 195
CviKI_1	RGCY	3 cut(s)	31, 59, 195
CviQI	GTAC	1 cut(s)	112
DinI	GGCGCC	1 cut(s)	89
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco52I	CGGCCG	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
FaeI	CATG	2 cut(s)	10, 112
FaiI	YATR	2 cut(s)	8, 110
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	2 cut(s)	6, 108
FokI	GGATG	1 cut(s)	267
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	2 cut(s)	77, 89
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	59, 195
HhaI	GCGC	2 cut(s)	78, 90
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	10, 112
Hin6I	GCGC	2 cut(s)	76, 88
HinP1I	GCGC	2 cut(s)	76, 88
HinfI	GANTC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	41, 147, 172
Hpy188III	TCNNGA	2 cut(s)	19, 273
HpyAV	CCTTC	3 cut(s)	16, 40, 142
HpyCH4III	ACNGT	2 cut(s)	16, 101
HpyCH4V	TGCA	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	10, 112
HspAI	GCGC	2 cut(s)	76, 88
KasI	GGCGCC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	6 cut(s)	4, 86, 114, 250, 257, 258
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	197
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	47, 80
MseI	TTAA	1 cut(s)	228
NarI	GGCGCC	1 cut(s)	88
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	10, 112
NlaIV	GGNNCC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	186
SetI	ASST	4 cut(s)	33, 39, 51, 168
SfaNI	GCATC	1 cut(s)	230
SfoI	GGCGCC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	82
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	16, 101
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	200
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	97, 173
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.