Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

28878123 .. 28878374

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTCGAAGCAACGGAGGGGAGGGTCGGCCGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCAGTGGCGATGACGATCAACTGCGCTGACAAAACCAGAGCCATGAACCTCTACATCATATCAGTGAAGGGGATCAAGGGGCGCCTCAACAGTCTGTCGTCGGCCTGCGTCGGCGACATGGTGATGGCCATAGTGAAGAAGGGAAAGCAGGATCTGAGGAAGAAGGTGCTGCCGGCCGTGGGGGTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

83

Amino Acids

8.92

Weight (kDa)

11.11

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	22 - 83	6.1e-09	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	42
AclWI	GGATC	2 cut(s)	140, 219
AcoI	YGGCCR	3 cut(s)	27, 186, 234
AcyI	GRCGYC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	239
AlwI	GGATC	2 cut(s)	140, 219
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	4 cut(s)	27, 162, 186, 234
ApeKI	GCWGC	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	86, 144
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	143, 245
BmrFI	CCNGG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	62
BseX3I	CGGCCG	2 cut(s)	27, 234
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	52
Bsh1285I	CGRYCG	2 cut(s)	30, 237
BshFI	GGCC	4 cut(s)	29, 164, 188, 236
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	2 cut(s)	30, 237
BsiSI	CCGG	3 cut(s)	30, 43, 233
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	4 cut(s)	29, 164, 188, 236
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	75, 132, 211
BspANI	GGCC	4 cut(s)	29, 164, 188, 236
BspCNI	CTCAG	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	143, 245
BspPI	GGATC	2 cut(s)	140, 219
BspT107I	GGYRCC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	75, 132, 211
BssNI	GRCGYC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	166, 234
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	2 cut(s)	86, 144
BstKTI	GATC	3 cut(s)	78, 135, 214
BstMBI	GATC	3 cut(s)	75, 132, 211
BstMCI	CGRYCG	2 cut(s)	30, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	2 cut(s)	27, 234
BsuRI	GGCC	4 cut(s)	29, 164, 188, 236
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	69, 129
Cac8I	GCNNGC	2 cut(s)	166, 234
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	2 cut(s)	86, 144
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	157
CviAII	CATG	2 cut(s)	103, 178
CviJI	RGCY	5 cut(s)	29, 101, 164, 188, 236
CviKI_1	RGCY	5 cut(s)	29, 101, 164, 188, 236
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	143
DpnI	GATC	3 cut(s)	77, 134, 213
DpnII	GATC	3 cut(s)	75, 132, 211
EaeI	YGGCCR	3 cut(s)	27, 186, 234
EagI	CGGCCG	2 cut(s)	27, 234
EclXI	CGGCCG	2 cut(s)	27, 234
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	2 cut(s)	27, 234
EgeI	GGCGCC	1 cut(s)	143
EheI	GGCGCC	1 cut(s)	143
FaeI	CATG	2 cut(s)	106, 181
FaiI	YATR	4 cut(s)	104, 119, 179, 191
FatI	CATG	2 cut(s)	102, 177
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	2 cut(s)	85, 143
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	29, 164, 188, 236
HapII	CCGG	3 cut(s)	30, 43, 233
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	86, 144
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	106, 181
Hin6I	GCGC	2 cut(s)	84, 142
HinP1I	GCGC	2 cut(s)	84, 142
HpaII	CCGG	3 cut(s)	30, 43, 233
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	163, 173
HpyAV	CCTTC	3 cut(s)	121, 193, 217
HpyCH4III	ACNGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	106, 181
HspAI	GCGC	2 cut(s)	84, 142
KasI	GGCGCC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	75, 132, 211
LpnPI	CCDG	8 cut(s)	38, 43, 56, 75, 109, 178, 194, 246
Lsp1109I	GCAGC	1 cut(s)	216
MalI	GATC	3 cut(s)	77, 134, 213
MboI	GATC	3 cut(s)	75, 132, 211
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	142
MnlI	CCTC	5 cut(s)	9, 14, 119, 155, 210
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	42
MroNI	GCCGGC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	3 cut(s)	30, 43, 233
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	75, 132, 211
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	106, 181
NlaIV	GGNNCC	2 cut(s)	143, 245
PdiI	GCCGGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	231
PluTI	GGCGCC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	143, 245
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	75, 132, 211
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
SspDI	GGCGCC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	69, 129
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	28, 236
TspRI	CASTG	2 cut(s)	69, 129
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.