Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

29930269 .. 29932065

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAACGAGGTCGTGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCTGCCACAGTGAACTGCGCAGACAACACCGGTGCTAAGAACCTTTACATAATTTCTGTAAAGGGAATCAAGGGTCGCCTTAACCGCCTCCCTTCTGCTTGTGTTGGTGACATGGTGATGGCAACTGTCAAGAAAGGCAAGCCTGATCTCCGTAAGAAGGTCTTGCCCGCTGTTATTGTGCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTTTTCATGTACTTCGAAGATAATGCTGGTGTCATCGTAAATCCAAAGGGCGAAATGAAAGGGTCTGCGATCACTGGACCTATTGGAAAGGAATGTGCTGATCTGTGGCCAAGGATTGCAAGTGCAGCCAATGCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

141

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	151, 234
AcoI	YGGCCR	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	68, 404
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	4 cut(s)	86, 249, 255, 267
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	185, 193
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	55, 416
BccI	CCATC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	2 cut(s)	69, 405
BlsI	GCNGC	2 cut(s)	70, 406
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	260, 389
BsaWI	WCCGGW	2 cut(s)	42, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	2 cut(s)	61, 95
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	260, 389
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	55, 416
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	95
BsiSI	CCGG	4 cut(s)	30, 43, 62, 96
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	211, 348, 379
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	2 cut(s)	151, 234
BspANI	GGCC	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	61, 95
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	2 cut(s)	61, 95
BssECI	CCNNGG	2 cut(s)	260, 389
BssMI	GATC	3 cut(s)	211, 348, 379
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	260, 389
Bst4CI	ACNGT	3 cut(s)	76, 193, 278
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	206, 234, 251, 257
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	4 cut(s)	86, 249, 255, 267
BstKTI	GATC	3 cut(s)	214, 351, 382
BstMBI	GATC	3 cut(s)	211, 348, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
BstV1I	GCAGC	2 cut(s)	55, 416
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	81, 351
Cac8I	GCNNGC	4 cut(s)	206, 234, 251, 257
CfoI	GCGC	4 cut(s)	86, 249, 255, 267
Cfr10I	RCCGGY	2 cut(s)	61, 95
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	178, 261, 286
CviJI	RGCY	5 cut(s)	68, 208, 259, 388, 407
CviKI_1	RGCY	5 cut(s)	68, 208, 259, 388, 407
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	3 cut(s)	213, 350, 381
DpnII	GATC	3 cut(s)	211, 348, 379
EaeI	YGGCCR	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	260, 389
Eco47I	GGWCC	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	260, 389
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	260, 389
FaeI	CATG	3 cut(s)	181, 264, 289
FaiI	YATR	4 cut(s)	116, 179, 262, 287
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	3 cut(s)	177, 260, 285
FauI	CCCGC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	69, 405
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	69, 405
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	4 cut(s)	85, 248, 254, 266
GluI	GCNGC	2 cut(s)	69, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	4 cut(s)	30, 43, 62, 96
HhaI	GCGC	4 cut(s)	86, 249, 255, 267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	181, 264, 289
Hin6I	GCGC	4 cut(s)	84, 247, 253, 265
HinP1I	GCGC	4 cut(s)	84, 247, 253, 265
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	4 cut(s)	30, 43, 62, 96
HphI	GGTGA	2 cut(s)	185, 193
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	43, 196
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	168, 217
HpyCH4III	ACNGT	3 cut(s)	76, 193, 278
HpyCH4V	TGCA	2 cut(s)	398, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	181, 264, 289
HspAI	GCGC	4 cut(s)	84, 247, 253, 265
KasI	GGCGCC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	211, 348, 379
LpnPI	CCDG	9 cut(s)	38, 43, 56, 75, 109, 222, 263, 291, 339
Lsp1109I	GCAGC	2 cut(s)	55, 416
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	213, 350, 381
MboI	GATC	3 cut(s)	211, 348, 379
MboII	GAAGA	1 cut(s)	308
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	388
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	5, 14, 164
Mox20I	TGGCCA	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	2 cut(s)	147, 421
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	4 cut(s)	30, 43, 62, 96
MwoI	GCNNNNNNNGC	4 cut(s)	58, 150, 404, 410
NarI	GGCGCC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	211, 348, 379
NlaIII	CATG	3 cut(s)	181, 264, 289
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	173
NsbI	TGCGCA	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	70, 406
PluTI	GGCGCC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	147, 421
SatI	GCNGC	2 cut(s)	69, 405
Sau3AI	GATC	3 cut(s)	211, 348, 379
Sau96I	GGNCC	1 cut(s)	356
SetI	ASST	4 cut(s)	16, 111, 228, 361
SfoI	GGCGCC	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	294
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	151, 234
SspDI	GGCGCC	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	260, 389
TaaI	ACNGT	3 cut(s)	76, 193, 278
TaqI	TCGA	2 cut(s)	5, 294
TasI	AATT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	147, 421
Tru9I	TTAA	2 cut(s)	147, 421
TscAI	CASTG	2 cut(s)	81, 358
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	68, 404
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	274, 350
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	81, 358
VpaK11BI	GGWCC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.