RchiOBHm_Chr4g0395041

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001168
Physical Location & Seq
Reverse (-)
10809934 .. 10810522
589 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36751

Sequence Viewer

Length: 210 bp
ATGTACTTCGAAGATAATGCTGCTGATATTGTTAATCCGAAGGCAGAAATGAAAGTTGCAGGATCTGCAATTACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCTACTGCTGTTAATGCTATTGTTTCAGTGATACCATCTTCCGACCATCTCTCGGCAGAAGACAGATCTTGGTGTTGTCCTTCTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

69

Amino Acids

7.37

Weight (kDa)

4.56

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 2 - 45 2.7e-06 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 169
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 20
AspA2I CCTAGG 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 9
AvaII GGWCC 1 cut(s) 77
AvrII CCTAGG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 160, 171
BcgI CGANNNNNNTGC 1 cut(s) 33
BfaI CTAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 182
BisI GCNGC 1 cut(s) 21
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 3 cut(s) 62, 100, 182
BspANI GGCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 9
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 3 cut(s) 62, 100, 182
BssT1I CCWWGG 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 9
BstKTI GATC 3 cut(s) 65, 103, 185
BstMBI GATC 3 cut(s) 62, 100, 182
BstMWI GCNNNNNNNGC 2 cut(s) 65, 131
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 62, 182
BstYI RGATCY 2 cut(s) 62, 182
BsuRI GGCC 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 64, 102, 184
DpnII GATC 3 cut(s) 62, 100, 182
Eco130I CCWWGG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 39, 160
HpyAV CCTTC 3 cut(s) 34, 82, 207
HpyCH4V TGCA 2 cut(s) 59, 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 131
Kzo9I GATC 3 cut(s) 62, 100, 182
LpnPI CCDG 2 cut(s) 45, 60
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 111
MalI GATC 3 cut(s) 64, 102, 184
MboI GATC 3 cut(s) 62, 100, 182
MboII GAAGA 3 cut(s) 23, 147, 188
MflI RGATCY 2 cut(s) 62, 182
MluCI AATT 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 183
MseI TTAA 2 cut(s) 33, 129
MwoI GCNNNNNNNGC 2 cut(s) 65, 131
NdeII GATC 3 cut(s) 62, 100, 182
NmeAIII GCCGAG 1 cut(s) 149
NspV TTCGAA 1 cut(s) 9
PkrI GCNGC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 62, 182
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 33, 129
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 62, 100, 182
Sau96I GGNCC 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 9
SgeI CNNG 5 cut(s) 72, 87, 123, 181, 198
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 2 cut(s) 33, 129
Tru9I TTAA 2 cut(s) 33, 129
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 110
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.