Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

48995695 .. 48996887

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGGAGGGGAGGATCGGCCGGGAACAAGTTCCGTATGTCGCTGGGTCTGCCGGTGGCGGCGACGATCAACTGCGCCGACAACACCGGAGCCAAGAACCTCTACATCATATCCGTGAAGGGGATCAAGGGGCGCCTCAACCGTCTGCCGTCGGCCTGCGTCGGCGACATGGTGATGGCCACCGTGAAGAAGGGAAAGCCGGATCTGAGGAAGAAGGTGCTGCCGGCCGTGGTGGTCCGTCAGCGCAAGCCCTGGCGCCGAAAGGACGGAGTGTTCATGTACTTTGAGGACAACGCCGGCGTGATTGTGAACCCCAAGGGAGAGATGAAGGGGTCGGCTATTACTGGGCCGATCGGGAAGGAGTGCGCGGATCTCTGGCCCAGAATTGCAAGTGCTGCCAATGCTATCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AccII	CGCG	1 cut(s)	377
AciI	CCGC	2 cut(s)	68, 377
AclWI	GGATC	4 cut(s)	31, 140, 219, 387
AcoI	YGGCCR	3 cut(s)	27, 186, 234
AcyI	GRCGYC	2 cut(s)	142, 265
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	4 cut(s)	31, 140, 219, 387
AoxI	GGCC	6 cut(s)	27, 162, 186, 234, 356, 386
ApeKI	GCWGC	2 cut(s)	229, 404
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	5 cut(s)	86, 144, 255, 267, 377
AspS9I	GGNCC	3 cut(s)	244, 356, 387
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	141, 264
BbvI	GCAGC	2 cut(s)	216, 391
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	142, 221
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	2 cut(s)	145, 268
BisI	GCNGC	3 cut(s)	69, 230, 405
BlsI	GCNGC	3 cut(s)	70, 231, 406
Bme1390I	CCNGG	2 cut(s)	31, 262
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	244, 356, 387
BmiI	GGNNCC	3 cut(s)	100, 143, 266
BmrFI	CCNGG	2 cut(s)	31, 262
BmrI	ACTGGG	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	142, 265
BsaJI	CCNNGG	3 cut(s)	237, 260, 324
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	3 cut(s)	61, 232, 305
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	237, 260, 324
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	27, 234
BseXI	GCAGC	2 cut(s)	216, 391
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	3 cut(s)	30, 237, 363
BshFI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BshNI	GGYRCC	2 cut(s)	141, 264
BsiEI	CGRYCG	3 cut(s)	30, 237, 363
BsiSI	CCGG	6 cut(s)	30, 62, 96, 209, 233, 306
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
Bsp143I	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BspACI	CCGC	2 cut(s)	68, 377
BspANI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	100, 143, 266
BspPI	GGATC	4 cut(s)	31, 140, 219, 387
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrFI	RCCGGY	3 cut(s)	61, 232, 305
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	3 cut(s)	61, 232, 305
BssECI	CCNNGG	3 cut(s)	237, 260, 324
BssMI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BssNI	GRCGYC	2 cut(s)	142, 265
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	152, 193
BstACI	GRCGYC	2 cut(s)	142, 265
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	166, 234, 257, 307
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	2 cut(s)	145, 268
BstHHI	GCGC	5 cut(s)	86, 144, 255, 267, 377
BstKTI	GATC	6 cut(s)	26, 78, 135, 214, 363, 382
BstMBI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
BstMCI	CGRYCG	3 cut(s)	30, 237, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	29, 260
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	216, 391
BstX2I	RGATCY	2 cut(s)	211, 379
BstYI	RGATCY	2 cut(s)	211, 379
BstZI	CGGCCG	2 cut(s)	27, 234
BsuRI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BtgI	CCRYGG	1 cut(s)	237
Cac8I	GCNNGC	4 cut(s)	166, 234, 257, 307
CfoI	GCGC	5 cut(s)	86, 144, 255, 267, 377
Cfr10I	RCCGGY	3 cut(s)	61, 232, 305
Cfr13I	GGNCC	3 cut(s)	244, 356, 387
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	178, 286
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	2 cut(s)	143, 266
DpnI	GATC	6 cut(s)	25, 77, 134, 213, 362, 381
DpnII	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
EaeI	YGGCCR	3 cut(s)	27, 186, 234
EagI	CGGCCG	2 cut(s)	27, 234
EclXI	CGGCCG	2 cut(s)	27, 234
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	2 cut(s)	27, 234
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	2 cut(s)	143, 266
EheI	GGCGCC	2 cut(s)	143, 266
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	181, 289
FaiI	YATR	4 cut(s)	47, 119, 179, 287
FatI	CATG	2 cut(s)	177, 285
Fnu4HI	GCNGC	3 cut(s)	69, 230, 405
Fsp4HI	GCNGC	3 cut(s)	69, 230, 405
GlaI	GCGC	5 cut(s)	85, 143, 254, 266, 376
GluI	GCNGC	3 cut(s)	69, 230, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	145, 268
HaeIII	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
HapII	CCGG	6 cut(s)	30, 62, 96, 209, 233, 306
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	5 cut(s)	86, 144, 255, 267, 377
Hin1I	GRCGYC	2 cut(s)	142, 265
Hin1II	CATG	2 cut(s)	181, 289
Hin6I	GCGC	5 cut(s)	84, 142, 253, 265, 375
HinP1I	GCGC	5 cut(s)	84, 142, 253, 265, 375
HpaII	CCGG	6 cut(s)	30, 62, 96, 209, 233, 306
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	216, 422
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	3 cut(s)	76, 163, 173
HpyAV	CCTTC	5 cut(s)	121, 193, 217, 331, 361
HpyCH4III	ACNGT	2 cut(s)	152, 193
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	142, 265
Hsp92II	CATG	2 cut(s)	181, 289
HspAI	GCGC	5 cut(s)	84, 142, 253, 265, 375
KasI	GGCGCC	2 cut(s)	141, 264
KroI	GCCGGC	2 cut(s)	232, 305
KroNI	GCCGGC	2 cut(s)	234, 307
Kzo9I	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	216, 391
MalI	GATC	6 cut(s)	25, 77, 134, 213, 362, 381
MboI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	2 cut(s)	211, 379
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	2 cut(s)	142, 265
MnlI	CCTC	7 cut(s)	5, 9, 14, 119, 155, 210, 289
Mox20I	TGGCCA	1 cut(s)	188
MreI	CGCCGGCG	1 cut(s)	305
MroNI	GCCGGC	2 cut(s)	232, 305
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	6 cut(s)	30, 62, 96, 209, 233, 306
MspR9I	CCNGG	2 cut(s)	31, 262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
NaeI	GCCGGC	2 cut(s)	234, 307
NarI	GGCGCC	2 cut(s)	142, 265
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
NgoMIV	GCCGGC	2 cut(s)	232, 305
NlaIII	CATG	2 cut(s)	181, 289
NlaIV	GGNNCC	3 cut(s)	100, 143, 266
PdiI	GCCGGC	2 cut(s)	234, 307
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	70, 231, 406
Ple19I	CGATCG	1 cut(s)	363
PluTI	GGCGCC	2 cut(s)	145, 268
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	100, 143, 266
PspPI	GGNCC	3 cut(s)	244, 356, 387
PsuI	RGATCY	2 cut(s)	211, 379
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	3 cut(s)	69, 230, 405
Sau3AI	GATC	6 cut(s)	23, 75, 132, 211, 360, 379
Sau96I	GGNCC	3 cut(s)	244, 356, 387
ScrFI	CCNGG	2 cut(s)	31, 262
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	2 cut(s)	143, 266
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	68, 377
SspDI	GGCGCC	2 cut(s)	141, 264
StyD4I	CCNGG	2 cut(s)	29, 260
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	152, 193
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	229, 404
TspDTI	ATGAA	2 cut(s)	274, 350
TspGWI	ACGGA	4 cut(s)	32, 112, 236, 291
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.