Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

1212822 .. 1215000

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGTGCCAAGAATCTCTACATTATCTCTGTGAAGGGAATCAAGGGTCGTCTGAACCGGTTGCCGTCAGCTTGTGTGGGTGACATGGTCATGGCCACTGTGAAGAAAGGAAAGCCGGACCTCAGGAAGAAGGTGCTGCCAGCTGTCATTGTCAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAATGAATGGTGTTCTGAATTCTTTGTTTTCGATGAATTAGAGTGTTTAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

103

Amino Acids

11.51

Weight (kDa)

9.51

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	6 - 86	2.2e-25	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	53, 219
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	245
AgeI	ACCGGT	2 cut(s)	50, 105
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	2 cut(s)	119, 191
AluI	AGCT	2 cut(s)	119, 191
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	184, 205
ApoI	RAATTY	1 cut(s)	272
AsiGI	ACCGGT	2 cut(s)	50, 105
AspLEI	GCGC	3 cut(s)	41, 210, 222
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	43, 140
AvaII	GGWCC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	53, 219
BbvI	GCAGC	2 cut(s)	171, 217
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	97, 199
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	3 cut(s)	24, 185, 206
BlsI	GCNGC	3 cut(s)	25, 186, 207
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	55, 221
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	2 cut(s)	50, 105
Bse118I	RCCGGY	3 cut(s)	16, 50, 105
Bse21I	CCTNAGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	171, 217
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	2 cut(s)	53, 219
BshTI	ACCGGT	2 cut(s)	50, 105
BsiSI	CCGG	4 cut(s)	17, 51, 106, 164
BsnI	GGCC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	55, 221
BspT107I	GGYRCC	2 cut(s)	53, 219
BsrFI	RCCGGY	3 cut(s)	16, 50, 105
BssAI	RCCGGY	3 cut(s)	16, 50, 105
BssECI	CCNNGG	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	31, 148
BstACI	GRCGYC	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	189, 212
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	3 cut(s)	41, 210, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 211
BstV1I	GCAGC	2 cut(s)	171, 217
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	189, 212
CfoI	GCGC	3 cut(s)	41, 210, 222
Cfr10I	RCCGGY	3 cut(s)	16, 50, 105
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	244
CspAI	ACCGGT	2 cut(s)	50, 105
CviAII	CATG	3 cut(s)	133, 139, 241
CviJI	RGCY	5 cut(s)	119, 143, 163, 191, 214
CviKI_1	RGCY	5 cut(s)	119, 143, 163, 191, 214
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	221
EheI	GGCGCC	1 cut(s)	221
FaeI	CATG	3 cut(s)	136, 142, 244
FaiI	YATR	3 cut(s)	134, 140, 242
FatI	CATG	3 cut(s)	132, 138, 240
Fnu4HI	GCNGC	3 cut(s)	24, 185, 206
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	24, 185, 206
GlaI	GCGC	3 cut(s)	40, 209, 221
GluI	GCNGC	3 cut(s)	24, 185, 206
GsaI	CCCAGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	4 cut(s)	17, 51, 106, 164
HhaI	GCGC	3 cut(s)	41, 210, 222
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	136, 142, 244
Hin6I	GCGC	3 cut(s)	39, 208, 220
HinP1I	GCGC	3 cut(s)	39, 208, 220
HinfI	GANTC	2 cut(s)	61, 87
HpaII	CCGG	4 cut(s)	17, 51, 106, 164
HphI	GGTGA	2 cut(s)	43, 140
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	102, 271
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	76, 172, 245
HpyCH4III	ACNGT	2 cut(s)	31, 148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 211
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	3 cut(s)	136, 142, 244
HspAI	GCGC	3 cut(s)	39, 208, 220
KasI	GGCGCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	30, 64, 119, 157, 177, 187, 201
Lsp1109I	GCAGC	2 cut(s)	171, 217
MaeIII	GTNAC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	163, 187
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	272, 290, 303
MluNI	TGGCCA	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	302, 310
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	4 cut(s)	17, 51, 106, 164
MwoI	GCNNNNNNNGC	2 cut(s)	13, 211
NarI	GGCGCC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	136, 142, 244
NlaIV	GGNNCC	2 cut(s)	55, 221
NmuCI	GTSAC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	61, 87
PflFI	GACNNNGTC	1 cut(s)	134
PinAI	ACCGGT	2 cut(s)	50, 105
PkrI	GCNGC	3 cut(s)	25, 186, 207
PluTI	GGCGCC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	55, 221
PspPI	GGNCC	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	302, 310
SatI	GCNGC	3 cut(s)	24, 185, 206
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	5 cut(s)	121, 171, 183, 193, 256
SfoI	GGCGCC	1 cut(s)	221
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	272, 290, 303
SsiI	CCGC	1 cut(s)	23
SspDI	GGCGCC	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	31, 148
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	272, 290, 303
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	61, 87
Tru1I	TTAA	2 cut(s)	302, 310
Tru9I	TTAA	2 cut(s)	302, 310
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	184, 205
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	229, 273, 303
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.