Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006211.1

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

38502 .. 38836

Gene Structure 335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006211.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgcttgcagcattgtattgtatggataatctttcatttatacttgttgttcatcacttattttgcttctgttcttcatttgcagataatgctggtgttattgtcaatccaaagggagaaatgaaagggtctgcaattactggtcctattgggaaggagtgtgctgatctatggccaaggattgccagtgctgctaatgctatcgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070180 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

5.98

Isoelectric Point (pI)

17.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	173
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	8, 191
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	20, 178
BisI	GCNGC	2 cut(s)	9, 192
BlsI	GCNGC	2 cut(s)	10, 193
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	145, 186
BseDI	CCNNGG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	145, 186
BseXI	GCAGC	2 cut(s)	20, 178
BshFI	GGCC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	145, 186
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 191, 197
BstV1I	GCAGC	2 cut(s)	20, 178
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	143
CviJI	RGCY	1 cut(s)	175
CviKI_1	RGCY	1 cut(s)	175
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaiI	YATR	3 cut(s)	23, 41, 172
Fnu4HI	GCNGC	2 cut(s)	9, 192
Fsp4HI	GCNGC	2 cut(s)	9, 192
GluI	GCNGC	2 cut(s)	9, 192
HaeIII	GGCC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	8, 83, 134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 191, 197
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	78, 126, 199
Lsp1109I	GCAGC	2 cut(s)	20, 178
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	1 cut(s)	208
Msp20I	TGGCCA	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	89, 191, 197
NdeII	GATC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	10, 193
PspPI	GGNCC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	2 cut(s)	9, 192
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	143
SgeI	CNNG	6 cut(s)	17, 56, 105, 153, 189, 198
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	176
TasI	AATT	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	2 cut(s)	8, 191
TspDTI	ATGAA	4 cut(s)	24, 41, 66, 137
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.