Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

1212822 .. 1215000

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG018900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCGAAGCGAGGGCGCGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGTGCCAAGAATCTCTACATTATCTCTGTGAAGGGAATCAAGGGTCGTCTGAACCGGTTGCCGTCAGCTTGTGTGGGTGACATGGTCATGGCCACTGTGAAGAAAGGAAAGCCGGACCTCAGGAAGAAGGTGCTGCCAGCTGTCATTGTCAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAATGAATGGTGTTCTGAATTCTTTGTTTTCGATGAATTAGAGTGTTTAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

118

Amino Acids

13.1

Weight (kDa)

10.03

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 101	3.5e-25	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	98, 264
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	18, 68
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AgeI	ACCGGT	2 cut(s)	95, 150
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	2 cut(s)	164, 236
AluI	AGCT	2 cut(s)	164, 236
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	229, 250
ApoI	RAATTY	1 cut(s)	317
AsiGI	ACCGGT	2 cut(s)	95, 150
AspLEI	GCGC	4 cut(s)	18, 86, 255, 267
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	88, 185
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	98, 264
BbvI	GCAGC	2 cut(s)	216, 262
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	142, 244
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	3 cut(s)	69, 230, 251
BlsI	GCNGC	3 cut(s)	70, 231, 252
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	100, 266
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	3 cut(s)	42, 95, 150
Bse118I	RCCGGY	3 cut(s)	61, 95, 150
Bse21I	CCTNAGG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	51, 280
BseMII	CTCAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	216, 262
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	2 cut(s)	98, 264
BshTI	ACCGGT	2 cut(s)	95, 150
BsiSI	CCGG	6 cut(s)	30, 43, 62, 96, 151, 209
BsnI	GGCC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	42
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	100, 266
BspT107I	GGYRCC	2 cut(s)	98, 264
BsrFI	RCCGGY	3 cut(s)	61, 95, 150
BssAI	RCCGGY	3 cut(s)	61, 95, 150
BssECI	CCNNGG	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	76, 193
BstACI	GRCGYC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	234, 257
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	51, 280
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	4 cut(s)	18, 86, 255, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 256
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	216, 262
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	51, 280
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	234, 257
CfoI	GCGC	4 cut(s)	18, 86, 255, 267
Cfr10I	RCCGGY	3 cut(s)	61, 95, 150
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	2 cut(s)	95, 150
CviAII	CATG	3 cut(s)	178, 184, 286
CviJI	RGCY	5 cut(s)	164, 188, 208, 236, 259
CviKI_1	RGCY	5 cut(s)	164, 188, 208, 236, 259
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	317
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	3 cut(s)	181, 187, 289
FaiI	YATR	3 cut(s)	179, 185, 287
FatI	CATG	3 cut(s)	177, 183, 285
Fnu4HI	GCNGC	3 cut(s)	69, 230, 251
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	3 cut(s)	69, 230, 251
GlaI	GCGC	4 cut(s)	17, 85, 254, 266
GluI	GCNGC	3 cut(s)	69, 230, 251
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	6 cut(s)	30, 43, 62, 96, 151, 209
HhaI	GCGC	4 cut(s)	18, 86, 255, 267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	181, 187, 289
Hin6I	GCGC	4 cut(s)	16, 84, 253, 265
HinP1I	GCGC	4 cut(s)	16, 84, 253, 265
HinfI	GANTC	2 cut(s)	106, 132
HpaII	CCGG	6 cut(s)	30, 43, 62, 96, 151, 209
HphI	GGTGA	2 cut(s)	88, 185
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	147, 316
Hpy188III	TCNNGA	2 cut(s)	43, 217
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	121, 217, 290
HpyCH4III	ACNGT	2 cut(s)	76, 193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 256
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	181, 187, 289
HspAI	GCGC	4 cut(s)	16, 84, 253, 265
KasI	GGCGCC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	216, 262
MaeIII	GTNAC	1 cut(s)	173
MboII	GAAGA	2 cut(s)	208, 232
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	3 cut(s)	317, 335, 348
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	5, 14, 224
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	347, 355
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	6 cut(s)	30, 43, 62, 96, 151, 209
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	58, 256
NarI	GGCGCC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	181, 187, 289
NlaIV	GGNNCC	2 cut(s)	100, 266
NmuCI	GTSAC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	106, 132
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	2 cut(s)	95, 150
PkrI	GCNGC	3 cut(s)	70, 231, 252
PluTI	GGCGCC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	100, 266
PspPI	GGNCC	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	347, 355
SatI	GCNGC	3 cut(s)	69, 230, 251
Sau96I	GGNCC	1 cut(s)	211
SetI	ASST	5 cut(s)	166, 216, 228, 238, 301
SfoI	GGCGCC	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	317, 335, 348
SsiI	CCGC	2 cut(s)	18, 68
SspDI	GGCGCC	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	76, 193
TaqI	TCGA	2 cut(s)	5, 330
TasI	AATT	3 cut(s)	317, 335, 348
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	106, 132
Tru1I	TTAA	2 cut(s)	347, 355
Tru9I	TTAA	2 cut(s)	347, 355
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	229, 250
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	274, 318, 348
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.