RchiOBHm_Chr4g0395051

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001168
Physical Location & Seq
Reverse (-)
10810538 .. 10810762
225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36752

Sequence Viewer

Length: 225 bp
ATGTCACTGGGTCTGCCAGTGGCAGCCACAGTGAACTGTGCTGACAATACAGGAGCTAAGAACCTGTACATCATCCAAGTCAAGGGAATCAAGGGTCGTCTGAATCAGTTGCCATCTGCTTGTGTTGGTGACATGGTCATGACCACTGTGAAGAAGGGTAAGCCTGATCTGATGAAGAAGGTCCTGCCAGCTGTCATTTTGGGGCAGCGCAAGCCATGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

74

Amino Acids

7.93

Weight (kDa)

10.03

Isoelectric Point (pI)

21.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 6 - 73 3.4e-16 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 56, 191
AluI AGCT 2 cut(s) 56, 191
ApeKI GCWGC 2 cut(s) 23, 205
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 35, 217
BccI CCATC 1 cut(s) 121
BisI GCNGC 2 cut(s) 24, 206
BlsI GCNGC 2 cut(s) 25, 207
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 17
BmuI ACTGGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 12, 17
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 12, 17
BseXI GCAGC 2 cut(s) 35, 217
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 2 cut(s) 12, 17
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 31, 38, 148
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 189, 212
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 35, 217
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 5 cut(s) 5, 24, 36, 144, 220
Cac8I GCNNGC 2 cut(s) 189, 212
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 133, 139, 216
CviJI RGCY 5 cut(s) 26, 56, 163, 191, 214
CviKI_1 RGCY 5 cut(s) 26, 56, 163, 191, 214
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 136, 142, 219
FaiI YATR 3 cut(s) 134, 140, 217
FatI CATG 3 cut(s) 132, 138, 215
Fnu4HI GCNGC 2 cut(s) 24, 206
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 24, 206
GlaI GCGC 1 cut(s) 209
GluI GCNGC 2 cut(s) 24, 206
HhaI GCGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 136, 142, 219
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 87, 103
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 102, 171
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 148, 172
HpyCH4III ACNGT 3 cut(s) 31, 38, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 3 cut(s) 136, 142, 219
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 30, 36, 77, 177, 197, 201
Lsp1109I GCAGC 2 cut(s) 35, 217
MaeIII GTNAC 2 cut(s) 3, 128
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 163, 187
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 211
NcoI CCATGG 1 cut(s) 215
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 136, 142, 219
NmuCI GTSAC 2 cut(s) 3, 128
PagI TCATGA 1 cut(s) 138
PfeI GAWTC 2 cut(s) 87, 103
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 25, 207
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 2 cut(s) 24, 206
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 181
SetI ASST 4 cut(s) 58, 66, 183, 193
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 3 cut(s) 31, 38, 148
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 87, 103
TscAI CASTG 4 cut(s) 12, 24, 36, 151
TseFI GTSAC 2 cut(s) 3, 128
TseI GCWGC 2 cut(s) 23, 205
Tsp45I GTSAC 2 cut(s) 3, 128
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 4 cut(s) 12, 24, 36, 151
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.