Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

48023784 .. 48025676

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGGCGCGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGTGCCAAGAATCTCTACATTATCTCTGTGAAGGGAATCAAGGGTCGTCTGAACCGGTTGCCGTCGGCTTGTGTGGGTGACATGGTCATGGCCACTGTGAAGAAAGGAAAGCCGGACCTCAGGAAGAAGGTGCTGCCAGCTGTCATTGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGGGTTTTCATGTACTTTGAAGATAATGCTGGTGTCATTGTGAATCCAAAGGGTGAAATGAAAGGATCTGCTATCACTGGGCCTATTGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCGAGTGCAGCTAATGCCATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	98, 264
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	18, 68
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	2 cut(s)	186, 386
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	2 cut(s)	236, 407
AluI	AGCT	2 cut(s)	236, 407
AlwI	GGATC	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	3 cut(s)	186, 356, 386
ApeKI	GCWGC	3 cut(s)	229, 250, 404
AsiGI	ACCGGT	1 cut(s)	150
AspLEI	GCGC	5 cut(s)	18, 86, 255, 267, 377
AspS9I	GGNCC	2 cut(s)	211, 356
AsuHPI	GGTGA	3 cut(s)	88, 185, 341
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	215
BalI	TGGCCA	2 cut(s)	188, 388
BanI	GGYRCC	2 cut(s)	98, 264
BbvI	GCAGC	3 cut(s)	216, 262, 416
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	142, 244
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	4 cut(s)	69, 230, 251, 405
BlsI	GCNGC	4 cut(s)	70, 231, 252, 406
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 356
BmiI	GGNNCC	2 cut(s)	100, 266
BmrI	ACTGGG	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	2 cut(s)	42, 150
Bse118I	RCCGGY	2 cut(s)	61, 150
Bse1I	ACTGG	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	51, 280
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	216, 262, 416
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	188, 358, 388
BshNI	GGYRCC	2 cut(s)	98, 264
BshTI	ACCGGT	1 cut(s)	150
BsiSI	CCGG	5 cut(s)	30, 43, 62, 151, 209
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	188, 358, 388
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	341, 379
BspACI	CCGC	2 cut(s)	18, 68
BspANI	GGCC	3 cut(s)	188, 358, 388
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	100, 266
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	2 cut(s)	98, 264
BsrFI	RCCGGY	2 cut(s)	61, 150
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	2 cut(s)	61, 150
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	341, 379
BssNI	GRCGYC	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	76, 193
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	234, 257
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	51, 280
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	5 cut(s)	18, 86, 255, 267, 377
BstKTI	GATC	2 cut(s)	344, 382
BstMBI	GATC	2 cut(s)	341, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 256, 404, 410
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	216, 262, 416
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	188, 358, 388
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	51, 280
BtsIMutI	CAGTG	2 cut(s)	189, 351
Cac8I	GCNNGC	2 cut(s)	234, 257
CfoI	GCGC	5 cut(s)	18, 86, 255, 267, 377
Cfr10I	RCCGGY	2 cut(s)	61, 150
Cfr13I	GGNCC	2 cut(s)	211, 356
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	3 cut(s)	178, 184, 286
CviJI	RGCY	8 cut(s)	164, 188, 208, 236, 259, 358, 388, 407
CviKI_1	RGCY	8 cut(s)	164, 188, 208, 236, 259, 358, 388, 407
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	2 cut(s)	343, 381
DpnII	GATC	2 cut(s)	341, 379
EaeI	YGGCCR	2 cut(s)	186, 386
Eco47I	GGWCC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	215
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	3 cut(s)	181, 187, 289
FaiI	YATR	4 cut(s)	179, 185, 287, 416
FatI	CATG	3 cut(s)	177, 183, 285
Fnu4HI	GCNGC	4 cut(s)	69, 230, 251, 405
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	4 cut(s)	69, 230, 251, 405
GlaI	GCGC	5 cut(s)	17, 85, 254, 266, 376
GluI	GCNGC	4 cut(s)	69, 230, 251, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	3 cut(s)	188, 358, 388
HapII	CCGG	5 cut(s)	30, 43, 62, 151, 209
HhaI	GCGC	5 cut(s)	18, 86, 255, 267, 377
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	181, 187, 289
Hin6I	GCGC	5 cut(s)	16, 84, 253, 265, 375
HinP1I	GCGC	5 cut(s)	16, 84, 253, 265, 375
HinfI	GANTC	3 cut(s)	106, 132, 319
HpaII	CCGG	5 cut(s)	30, 43, 62, 151, 209
HphI	GGTGA	3 cut(s)	88, 185, 341
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	43, 217
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	76, 163
HpyAV	CCTTC	3 cut(s)	121, 217, 361
HpyCH4III	ACNGT	2 cut(s)	76, 193
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 256, 404, 410
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	181, 187, 289
HspAI	GCGC	5 cut(s)	16, 84, 253, 265, 375
KasI	GGCGCC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	341, 379
Lsp1109I	GCAGC	3 cut(s)	216, 262, 416
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	343, 381
MboI	GATC	2 cut(s)	341, 379
MboII	GAAGA	3 cut(s)	208, 232, 308
MflI	RGATCY	1 cut(s)	341
MlsI	TGGCCA	2 cut(s)	188, 388
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	2 cut(s)	188, 388
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	5, 14, 224, 240
Mox20I	TGGCCA	2 cut(s)	188, 388
MroI	TCCGGA	1 cut(s)	42
MscI	TGGCCA	2 cut(s)	188, 388
MseI	TTAA	1 cut(s)	421
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	188, 388
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	5 cut(s)	30, 43, 62, 151, 209
Mva1269I	GAATGC	1 cut(s)	377
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	58, 256, 404, 410
NarI	GGCGCC	1 cut(s)	265
NdeII	GATC	2 cut(s)	341, 379
NlaIII	CATG	3 cut(s)	181, 187, 289
NlaIV	GGNNCC	2 cut(s)	100, 266
NmuCI	GTSAC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	106, 132, 319
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	70, 231, 252, 406
PluTI	GGCGCC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	100, 266
PspPI	GGNCC	2 cut(s)	211, 356
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	421
SatI	GCNGC	4 cut(s)	69, 230, 251, 405
Sau3AI	GATC	2 cut(s)	341, 379
Sau96I	GGNCC	2 cut(s)	211, 356
SetI	ASST	4 cut(s)	216, 228, 238, 409
SfoI	GGCGCC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	18, 68
SspDI	GGCGCC	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	76, 193
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	106, 132, 319
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TscAI	CASTG	2 cut(s)	196, 358
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	229, 250, 404
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	274, 350
TspRI	CASTG	2 cut(s)	196, 358
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.