RLG00000009643

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001168
Physical Location & Seq
Forward (+)
55814142 .. 55814536
395 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009643

Sequence Viewer

Length: 306 bp
ATGTCGAAGCGAGGACGCGGAGGATCGGCTGGGAACAAGTTCAGGATGTCACTGGGTCTACCGGTGGCGGCGACGGTGAATTGTGCTGACAATACAGGGGCGAAGAACCTGTACATCATCTCAGTGAAGGGAATCAAGGGTCGTCTGAATCGGTTGCCGTCTGCTTGCGTCGGTGACATGGTCATGGCCACTGTCAAGAAGGGTAAGCCGGATTTGAGGAAGAAGGTCCTCCCGGCTGTCATTGTCAGGCAGCGCAAGCCCTGGCGCCGAAAGGATGGTGTCTTCATGTACTTCGAAGGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

102

Amino Acids

11.06

Weight (kDa)

11.08

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 21 - 99 1.6e-24 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 18, 68
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 2 cut(s) 113, 290
AgeI ACCGGT 1 cut(s) 61
AjnI CCWGG 1 cut(s) 260
AlwI GGATC 1 cut(s) 31
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 250
AsiGI ACCGGT 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 255, 267
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 88, 185
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 2 cut(s) 69, 251
BlsI GCNGC 2 cut(s) 70, 252
Bme1390I CCNGG 2 cut(s) 233, 262
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 233, 262
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 51, 280
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 264
BshTI ACCGGT 1 cut(s) 61
BsiSI CCGG 3 cut(s) 62, 209, 233
BsnI GGCC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 2 cut(s) 18, 68
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 134
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 76, 193
BstACI GRCGYC 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 166, 257
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 51, 280
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 255, 267
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 231, 260
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 51, 280
BtsIMutI CAGTG 3 cut(s) 50, 129, 189
Cac8I GCNNGC 2 cut(s) 166, 257
CfoI GCGC 2 cut(s) 255, 267
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 2 cut(s) 24, 157
Csp6I GTAC 2 cut(s) 112, 289
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 3 cut(s) 178, 184, 286
CviJI RGCY 5 cut(s) 29, 188, 208, 236, 259
CviKI_1 RGCY 5 cut(s) 29, 188, 208, 236, 259
CviQI GTAC 2 cut(s) 112, 289
DdeI CTNAG 1 cut(s) 121
DinI GGCGCC 1 cut(s) 266
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 260
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
FaeI CATG 3 cut(s) 181, 187, 289
FaiI YATR 3 cut(s) 179, 185, 287
FatI CATG 3 cut(s) 177, 183, 285
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 69, 251
FokI GGATG 2 cut(s) 58, 287
Fsp4HI GCNGC 2 cut(s) 69, 251
GlaI GCGC 2 cut(s) 254, 266
GluI GCNGC 2 cut(s) 69, 251
GsaI CCCAGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 1 cut(s) 188
HapII CCGG 3 cut(s) 62, 209, 233
HgaI GACGC 2 cut(s) 24, 157
HhaI GCGC 2 cut(s) 255, 267
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 181, 187, 289
Hin6I GCGC 2 cut(s) 253, 265
HinP1I GCGC 2 cut(s) 253, 265
HinfI GANTC 2 cut(s) 132, 148
HpaII CCGG 3 cut(s) 62, 209, 233
HphI GGTGA 2 cut(s) 88, 185
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 43, 196
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 2 cut(s) 76, 173
HpyAV CCTTC 4 cut(s) 121, 193, 217, 290
HpyCH4III ACNGT 2 cut(s) 76, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 181, 187, 289
HspAI GCGC 2 cut(s) 253, 265
KasI GGCGCC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 23
Lsp1109I GCAGC 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 48, 173
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 3 cut(s) 115, 232, 274
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 79
MluNI TGGCCA 1 cut(s) 188
Mly113I GGCGCC 1 cut(s) 265
MnlI CCTC 4 cut(s) 5, 14, 210, 239
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 188
MslI CAYNNNNRTG 2 cut(s) 122, 182
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 3 cut(s) 62, 209, 233
MspR9I CCNGG 2 cut(s) 233, 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 265
NciI CCSGG 1 cut(s) 233
NdeII GATC 1 cut(s) 23
NlaIII CATG 3 cut(s) 181, 187, 289
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 48, 173
NspV TTCGAA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 132, 148
PflFI GACNNNGTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 61
PkrI GCNGC 2 cut(s) 70, 252
PluTI GGCGCC 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 113, 290
RsaNI GTAC 2 cut(s) 112, 289
RseI CAYNNNNRTG 2 cut(s) 122, 182
SatI GCNGC 2 cut(s) 69, 251
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 233, 262
SetI ASST 3 cut(s) 111, 228, 301
SfoI GGCGCC 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 122, 182
Sse9I AATT 1 cut(s) 79
SsiI CCGC 2 cut(s) 18, 68
SspDI GGCGCC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 231, 260
TaaI ACNGT 2 cut(s) 76, 193
TaqI TCGA 2 cut(s) 5, 294
TasI AATT 1 cut(s) 79
TatI WGTACW 2 cut(s) 111, 288
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 132, 148
TscAI CASTG 3 cut(s) 57, 129, 196
TseFI GTSAC 2 cut(s) 48, 173
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 2 cut(s) 48, 173
TspDTI ATGAA 1 cut(s) 274
TspRI CASTG 3 cut(s) 57, 129, 196
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.