Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

22725496 .. 22728171

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1225500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGGCGTGGAGGGTCCGCTGGAAACAAGTTTAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCCGATAACACCGGAGCTAAGAATCTTTACATCATATCCGTGAAGGGAATCAAGGGTCGTTTGAATAGGCTGCCATCTGCCTGCGTTGGTGACATGGTCATGGCCACTGTCAAGAAGGGAAAGCCTGACCTCAGGAAGAAGGTCCTACCTGCTGTCATCGTGAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCGAAGGGAGAAATGAAAGGGTCTGCTATTACCGGTCCAATCGGGAAGGAGTGCGCTGATCTCTGGCCTAGGATTGCAAGTGCTGCCAATGCCATCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

141

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	264
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	148, 296
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	186, 386
ApeKI	GCWGC	4 cut(s)	68, 154, 250, 404
AsiGI	ACCGGT	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	255, 267, 377
AspS9I	GGNCC	3 cut(s)	24, 226, 356
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	24, 226, 356
AvrII	CCTAGG	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	264
BbsI	GAAGAC	2 cut(s)	50, 274
BbvI	GCAGC	4 cut(s)	80, 141, 262, 391
BccI	CCATC	3 cut(s)	166, 269, 422
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	69, 155, 251, 405
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	4 cut(s)	70, 156, 252, 406
Bme18I	GGWCC	3 cut(s)	24, 226, 356
BmgT120I	GGNCC	3 cut(s)	24, 226, 356
BmiI	GGNNCC	2 cut(s)	25, 266
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	50, 274
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	260, 389
BsaWI	WCCGGW	2 cut(s)	95, 353
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	57, 62
Bse21I	CCTNAGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	260, 389
BseGI	GGATG	2 cut(s)	51, 280
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	57, 62
BseXI	GCAGC	4 cut(s)	80, 141, 262, 391
BshFI	GGCC	2 cut(s)	188, 388
BshNI	GGYRCC	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	96, 354
BsnI	GGCC	2 cut(s)	188, 388
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	188, 388
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	25, 266
BspMI	ACCTGC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	57, 62
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	260, 389
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	260, 389
Bst4CI	ACNGT	3 cut(s)	76, 83, 193
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	166, 257
BstDEI	CTNAG	2 cut(s)	102, 215
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	51, 280
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	255, 267, 377
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
BstV1I	GCAGC	4 cut(s)	80, 141, 262, 391
BstV2I	GAAGAC	2 cut(s)	50, 274
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	188, 388
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	51, 280
BtsIMutI	CAGTG	4 cut(s)	50, 69, 72, 189
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	166, 257
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	3 cut(s)	255, 267, 377
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	24, 226, 356
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	4 cut(s)	178, 184, 261, 286
CviJI	RGCY	7 cut(s)	71, 101, 154, 188, 208, 259, 388
CviKI_1	RGCY	7 cut(s)	71, 101, 154, 188, 208, 259, 388
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	102, 215
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	260, 389
Eco47I	GGWCC	3 cut(s)	24, 226, 356
Eco81I	CCTNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	260, 389
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	260, 389
FaeI	CATG	4 cut(s)	181, 187, 264, 289
FaiI	YATR	5 cut(s)	119, 179, 185, 262, 287
FatI	CATG	4 cut(s)	177, 183, 260, 285
Fnu4HI	GCNGC	4 cut(s)	69, 155, 251, 405
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	4 cut(s)	69, 155, 251, 405
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	3 cut(s)	254, 266, 376
GluI	GCNGC	4 cut(s)	69, 155, 251, 405
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	188, 388
HapII	CCGG	2 cut(s)	96, 354
HhaI	GCGC	3 cut(s)	255, 267, 377
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	181, 187, 264, 289
Hin6I	GCGC	3 cut(s)	253, 265, 375
HinP1I	GCGC	3 cut(s)	253, 265, 375
HinfI	GANTC	3 cut(s)	106, 132, 319
HpaII	CCGG	2 cut(s)	96, 354
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	196, 217, 244, 364
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	121, 193, 217, 319, 361
HpyCH4III	ACNGT	3 cut(s)	76, 83, 193
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
HpyF3I	CTNAG	2 cut(s)	102, 215
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	4 cut(s)	181, 187, 264, 289
HspAI	GCGC	3 cut(s)	253, 265, 375
KasI	GGCGCC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	4 cut(s)	80, 141, 262, 391
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	48, 173
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	50, 232, 274, 308
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	5, 14, 224, 240
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	2 cut(s)	96, 354
MwoI	GCNNNNNNNGC	3 cut(s)	256, 404, 410
NarI	GGCGCC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	181, 187, 264, 289
NlaIV	GGNNCC	2 cut(s)	25, 266
NmuCI	GTSAC	2 cut(s)	48, 173
PfeI	GAWTC	3 cut(s)	106, 132, 319
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	70, 156, 252, 406
PluTI	GGCGCC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	25, 266
PspPI	GGNCC	3 cut(s)	24, 226, 356
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	4 cut(s)	69, 155, 251, 405
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	3 cut(s)	24, 226, 356
SetI	ASST	4 cut(s)	103, 216, 228, 235
SfoI	GGCGCC	1 cut(s)	266
SinI	GGWCC	3 cut(s)	24, 226, 356
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
SsiI	CCGC	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	390
StyI	CCWWGG	2 cut(s)	260, 389
TaaI	ACNGT	3 cut(s)	76, 83, 193
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	106, 132, 319
TscAI	CASTG	4 cut(s)	57, 69, 79, 196
TseFI	GTSAC	2 cut(s)	48, 173
TseI	GCWGC	4 cut(s)	68, 154, 250, 404
Tsp45I	GTSAC	2 cut(s)	48, 173
TspDTI	ATGAA	2 cut(s)	274, 350
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	4 cut(s)	57, 69, 79, 196
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	3 cut(s)	24, 226, 356
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.