Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

29139135 .. 29139877

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTGGATGGGCCGAAACATGGAGTGCCCCTAGGAGCAGAAAATGTACGTATCTCAATTGATGTGTCTATCAAGGAGGATGCTTATCTCCCAATCCCAAATGTGTCAGGTGACATTTTTACAGTAAAGCAAGTCATCGGTACTCATGTTGCTTGGCCTCGACATCTTGTTTTAATGTCACATGAAGAGAACTCAATGAGCACTCGAAAGTCTTCGAGTAAAACACCATGCAGACAAGCAGCATACAAGATGCTTGTATCTGTGCATCTTCTACTGCGTTTGGCAAGAACAATGGATGAATCTATAGCAGTGTCGGTCCCCATGGAAGATGGTGTGTTTGGAAATGACCACAATACATTCATAAACAATAACGACATCATCCAGTTTTGTTTGATGCAACCAATATCCACCATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTGTTGAAAATGAAGGATGAGGATCACTTGTATGCATTTGTGGATCCTGGCCGCATCTCTAATGAAGTTGGAAAGGTTGAGGCTAGATCATGTGCGCTATCACTTAGATTAGAGTCTTGCTTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

191

Amino Acids

21.43

Weight (kDa)

6.43

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	7 - 59	3e-07	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	574
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	3 cut(s)	477, 485, 498
AcoI	YGGCCR	1 cut(s)	496
AfaI	GTAC	2 cut(s)	48, 142
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	493
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	477, 485, 498
AoxI	GGCC	3 cut(s)	11, 155, 496
ApeKI	GCWGC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	211
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	11, 316
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	316
AvrII	CCTAGG	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	30
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BamHI	GGATCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	2, 323
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	32, 531
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	240, 499
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	2 cut(s)	241, 500
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	11, 316
BmiI	GGNNCC	2 cut(s)	318, 492
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	5 cut(s)	70, 240, 274, 384, 510
BpiI	GAAGAC	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	50
BsaBI	GATNNNNATC	2 cut(s)	84, 468
BsaJI	CCNNGG	2 cut(s)	31, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	2 cut(s)	84, 468
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	31, 321
BseGI	GGATG	5 cut(s)	13, 85, 301, 378, 469
BseJI	GATNNNNATC	2 cut(s)	84, 468
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	3 cut(s)	13, 157, 498
BsiHKAI	GWGCWC	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	13, 157, 498
Bsp1286I	GDGCHC	2 cut(s)	30, 203
Bsp143I	GATC	3 cut(s)	469, 490, 533
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	3 cut(s)	13, 157, 498
BspLI	GGNNCC	2 cut(s)	318, 492
BspPI	GGATC	3 cut(s)	477, 485, 498
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	31, 321
BssMI	GATC	3 cut(s)	469, 490, 533
BssT1I	CCWWGG	2 cut(s)	31, 321
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	5 cut(s)	13, 85, 301, 378, 469
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	472, 493, 536
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	469, 490, 533
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	30
BstSNI	TACGTA	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	13, 157, 498
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	5 cut(s)	13, 85, 301, 378, 469
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	11, 316
Csp6I	GTAC	2 cut(s)	47, 141
CviAII	CATG	7 cut(s)	20, 146, 182, 228, 322, 430, 537
CviJI	RGCY	4 cut(s)	13, 157, 498, 530
CviKI_1	RGCY	4 cut(s)	13, 157, 498, 530
CviQI	GTAC	2 cut(s)	47, 141
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	3 cut(s)	471, 492, 535
DpnII	GATC	3 cut(s)	469, 490, 533
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco105I	TACGTA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	31, 321
Eco47I	GGWCC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	31, 321
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	2 cut(s)	31, 321
FaeI	CATG	7 cut(s)	23, 149, 185, 231, 325, 433, 540
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	7 cut(s)	19, 145, 181, 227, 321, 429, 536
Fnu4HI	GCNGC	2 cut(s)	240, 499
FokI	GGATG	5 cut(s)	20, 92, 308, 365, 476
Fsp4HI	GCNGC	2 cut(s)	240, 499
FspBI	CTAG	2 cut(s)	32, 531
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	240, 499
HaeIII	GGCC	3 cut(s)	13, 157, 498
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	7 cut(s)	23, 149, 185, 231, 325, 433, 540
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	2 cut(s)	299, 560
HphI	GGTGA	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	231, 265, 397, 417, 482
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	7 cut(s)	23, 149, 185, 231, 325, 433, 540
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	3 cut(s)	469, 490, 533
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	93, 395, 427, 480, 507
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	5 cut(s)	70, 240, 274, 384, 510
MaeI	CTAG	2 cut(s)	32, 531
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	110, 177
MalI	GATC	3 cut(s)	471, 492, 535
MboI	GATC	3 cut(s)	469, 490, 533
MboII	GAAGA	4 cut(s)	197, 204, 260, 338
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	30, 203
MluCI	AATT	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	70, 168, 449, 460, 520
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	469, 490, 533
NlaIII	CATG	7 cut(s)	23, 149, 185, 231, 325, 433, 540
NlaIV	GGNNCC	2 cut(s)	318, 492
NmuCI	GTSAC	2 cut(s)	110, 177
NsiI	ATGCAT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	241, 500
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Ppu21I	YACGTR	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	318, 492
PspPI	GGNCC	2 cut(s)	11, 316
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	48, 142
RsaNI	GTAC	2 cut(s)	47, 141
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	240, 499
Sau3AI	GATC	3 cut(s)	469, 490, 533
Sau96I	GGNCC	2 cut(s)	11, 316
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	2 cut(s)	30, 203
SetI	ASST	4 cut(s)	52, 112, 441, 525
SfaNI	GCATC	5 cut(s)	70, 240, 274, 384, 510
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	477
SnaBI	TACGTA	1 cut(s)	50
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	2 cut(s)	32, 531
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	31, 321
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	160, 205, 215
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	110, 177
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	110, 177
TspDTI	ATGAA	5 cut(s)	198, 312, 349, 473, 525
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	316
XmaJI	CCTAGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	32, 531
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.