Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

43581757 .. 43582206

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCGAAGCAAGGAAGGGGAGGGTCGGCTGGGAACAAGTTCAGGATGTCGCTGGGTCTGCCGGTGGCGGTGACGATCAACTGCGCTGACAACACCAGAGCCATGAACCTCTACATCATATCAGTGAAGGGGATCAAGGGGCGCCTCAACAGTATGTCGTCGGCCTGCGTCGGCGACATGGTGATGGCCATCGTGAAGAAGGGAAAACAGGATTTGAGGAAGAAGGTGCTGCCGGCCGTGGGGGTCGGTCAGCGCAAGCCCTGGCGCCGAAAGGACGAAGTGTTCATGTACTTTGAGGACGAGCAAGATGATTTGAATCTTGATGATTCAAATCAGGGGAAGAAGAAACCAAAAAAGAAGAAGAAAGAAAGAAAAAGAAGAATAAAGAAAGAAAGAAAAGACAAGAAAAAAAAACTTTTGAGGGTAAATCGGTCTTTCTGTCTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

149

Amino Acids

17.08

Weight (kDa)

10.42

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 101	9.4e-17	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	2 cut(s)	186, 234
AcyI	GRCGYC	2 cut(s)	142, 265
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	316, 330
AjnI	CCWGG	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	3 cut(s)	162, 186, 234
ApeKI	GCWGC	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	4 cut(s)	86, 144, 255, 267
AsuHPI	GGTGA	2 cut(s)	82, 193
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	141, 264
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	178, 197
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	262
BfoI	RGCGCY	2 cut(s)	145, 268
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	143, 266
BmrFI	CCNGG	1 cut(s)	262
BsaBI	GATNNNNATC	3 cut(s)	188, 315, 330
BsaHI	GRCGYC	2 cut(s)	142, 265
BsaJI	CCNNGG	2 cut(s)	237, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	2 cut(s)	61, 232
Bse8I	GATNNNNATC	3 cut(s)	188, 315, 330
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	237, 260
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	3 cut(s)	188, 315, 330
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	2 cut(s)	29, 52
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	164, 188, 236
BshNI	GGYRCC	2 cut(s)	141, 264
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	62, 233
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	3 cut(s)	164, 188, 236
Bsp143I	GATC	2 cut(s)	75, 132
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	3 cut(s)	164, 188, 236
BspLI	GGNNCC	2 cut(s)	143, 266
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrFI	RCCGGY	2 cut(s)	61, 232
BssAI	RCCGGY	2 cut(s)	61, 232
BssECI	CCNNGG	2 cut(s)	237, 260
BssMI	GATC	2 cut(s)	75, 132
BssNI	GRCGYC	2 cut(s)	142, 265
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	142, 265
BstC8I	GCNNGC	3 cut(s)	166, 234, 257
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	2 cut(s)	145, 268
BstHHI	GCGC	4 cut(s)	86, 144, 255, 267
BstKTI	GATC	2 cut(s)	78, 135
BstMBI	GATC	2 cut(s)	75, 132
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	164, 188, 236
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	166, 234, 257
CfoI	GCGC	4 cut(s)	86, 144, 255, 267
Cfr10I	RCCGGY	2 cut(s)	61, 232
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	103, 178, 286
CviJI	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviKI_1	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviQI	GTAC	1 cut(s)	289
DinI	GGCGCC	2 cut(s)	143, 266
DpnI	GATC	2 cut(s)	77, 134
DpnII	GATC	2 cut(s)	75, 132
EaeI	YGGCCR	2 cut(s)	186, 234
EagI	CGGCCG	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	260
EgeI	GGCGCC	2 cut(s)	143, 266
EheI	GGCGCC	2 cut(s)	143, 266
FaeI	CATG	3 cut(s)	106, 181, 289
FaiI	YATR	5 cut(s)	104, 119, 155, 179, 287
FatI	CATG	3 cut(s)	102, 177, 285
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	230
GlaI	GCGC	4 cut(s)	85, 143, 254, 266
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	2 cut(s)	33, 56
HaeII	RGCGCY	2 cut(s)	145, 268
HaeIII	GGCC	3 cut(s)	164, 188, 236
HapII	CCGG	2 cut(s)	62, 233
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	4 cut(s)	86, 144, 255, 267
Hin1I	GRCGYC	2 cut(s)	142, 265
Hin1II	CATG	3 cut(s)	106, 181, 289
Hin6I	GCGC	4 cut(s)	84, 142, 253, 265
HinP1I	GCGC	4 cut(s)	84, 142, 253, 265
HinfI	GANTC	2 cut(s)	316, 326
HpaII	CCGG	2 cut(s)	62, 233
HphI	GGTGA	2 cut(s)	82, 193
Hpy188III	TCNNGA	3 cut(s)	43, 193, 320
Hpy99I	CGWCG	2 cut(s)	163, 173
HpyAV	CCTTC	4 cut(s)	9, 121, 193, 217
HpyCH4III	ACNGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Hsp92I	GRCGYC	2 cut(s)	142, 265
Hsp92II	CATG	3 cut(s)	106, 181, 289
HspAI	GCGC	4 cut(s)	84, 142, 253, 265
KasI	GGCGCC	2 cut(s)	141, 264
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	75, 132
Lsp1109I	GCAGC	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	77, 134
MboI	GATC	2 cut(s)	75, 132
MboII	GAAGA	7 cut(s)	208, 232, 352, 355, 370, 373, 390
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	2 cut(s)	142, 265
MnlI	CCTC	6 cut(s)	14, 119, 155, 210, 289, 414
Mox20I	TGGCCA	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	2 cut(s)	62, 233
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	234
NarI	GGCGCC	2 cut(s)	142, 265
NdeII	GATC	2 cut(s)	75, 132
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	106, 181, 289
NlaIV	GGNNCC	2 cut(s)	143, 266
NmuCI	GTSAC	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	316, 326
PkrI	GCNGC	1 cut(s)	231
PluTI	GGCGCC	2 cut(s)	145, 268
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	29, 52
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	143, 266
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	75, 132
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	2 cut(s)	143, 266
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
SsiI	CCGC	1 cut(s)	68
SspDI	GGCGCC	2 cut(s)	141, 264
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	2 cut(s)	236, 420
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	316, 326
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	119, 274
TspRI	CASTG	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.