RchiOBHm_Chr4g0395151

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001168
Physical Location & Seq
Reverse (-)
10930875 .. 10931797
923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36760

Sequence Viewer

Length: 324 bp
ATGGTCATAGGCACTGTCAAGAAGGGTAAGCCTGATCTGATGAAGAAACCAGCTGTCATTTGGAGGCAGCGCAAGCCATGGCACCAAAAGGATGGTGTCTTCATGTACTTCGAAGATAATGCTGGTGTTATTGTTAATCCGAAGGGAGAAATGAAAGGATCTGCAATTACTGGTCTTATTGGGAGGAGTGTGCTGATCTGTGGCCTAGGATTGCCAGTGCTGCAAATGCTATCGTTTAAGTGCTACCATCTCCATCTCTCTGCACAAGACAGATCTTGGGGTTGTCCTTTTTTTTGTTTGATAATAGACATCCCCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

107

Amino Acids

12.01

Weight (kDa)

9.51

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 1 - 64 1.4e-14 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 1 cut(s) 107
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 67, 220
ApoI RAATTY 1 cut(s) 318
AspA2I CCTAGG 1 cut(s) 205
AspLEI GCGC 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 111
AvrII CCTAGG 1 cut(s) 205
BanI GGYRCC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 79, 207
BccI CCATC 3 cut(s) 86, 255, 261
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BfaI CTAG 1 cut(s) 206
BglII AGATCT 1 cut(s) 272
BisI GCNGC 2 cut(s) 68, 221
BlnI CCTAGG 1 cut(s) 205
BlsI GCNGC 2 cut(s) 69, 222
BmiI GGNNCC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 77, 205
Bse1I ACTGG 2 cut(s) 175, 215
BseDI CCNNGG 2 cut(s) 77, 205
BseGI GGATG 2 cut(s) 97, 309
BseNI ACTGG 2 cut(s) 175, 215
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 79, 207
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 81
BsnI GGCC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 34, 158, 195, 272
Bsp19I CCATGG 1 cut(s) 77
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 81
BsrI ACTGG 2 cut(s) 175, 215
BssECI CCNNGG 2 cut(s) 77, 205
BssMI GATC 4 cut(s) 34, 158, 195, 272
BssT1I CCWWGG 2 cut(s) 77, 205
Bst4CI ACNGT 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 97, 309
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 37, 161, 198, 275
BstMBI GATC 4 cut(s) 34, 158, 195, 272
BstMWI GCNNNNNNNGC 3 cut(s) 73, 220, 226
BstV1I GCAGC 2 cut(s) 79, 207
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 158, 272
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 158, 272
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 97, 309
BtsIMutI CAGTG 2 cut(s) 12, 222
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 78, 103
CviJI RGCY 4 cut(s) 31, 53, 76, 204
CviKI_1 RGCY 4 cut(s) 31, 53, 76, 204
CviQI GTAC 1 cut(s) 106
DpnI GATC 4 cut(s) 36, 160, 197, 274
DpnII GATC 4 cut(s) 34, 158, 195, 272
Eco130I CCWWGG 2 cut(s) 77, 205
EcoT14I CCWWGG 2 cut(s) 77, 205
ErhI CCWWGG 2 cut(s) 77, 205
FaeI CATG 2 cut(s) 81, 106
FaiI YATR 3 cut(s) 8, 79, 104
FatI CATG 2 cut(s) 77, 102
Fnu4HI GCNGC 2 cut(s) 68, 221
FokI GGATG 2 cut(s) 104, 296
Fsp4HI GCNGC 2 cut(s) 68, 221
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 68, 221
HaeIII GGCC 1 cut(s) 204
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 81, 106
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 39, 141
Hpy188III TCNNGA 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 16, 136
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 164, 223, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 220, 226
Hsp92II CATG 2 cut(s) 81, 106
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 4 cut(s) 34, 158, 195, 272
LpnPI CCDG 5 cut(s) 45, 63, 108, 156, 228
Lsp1109I GCAGC 2 cut(s) 79, 207
MaeI CTAG 1 cut(s) 206
MalI GATC 4 cut(s) 36, 160, 197, 274
MboI GATC 4 cut(s) 34, 158, 195, 272
MboII GAAGA 3 cut(s) 55, 91, 125
MflI RGATCY 2 cut(s) 158, 272
MluCI AATT 2 cut(s) 165, 318
MnlI CCTC 2 cut(s) 57, 177
MseI TTAA 2 cut(s) 135, 237
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 73, 220, 226
NcoI CCATGG 1 cut(s) 77
NdeII GATC 4 cut(s) 34, 158, 195, 272
NlaIII CATG 2 cut(s) 81, 106
NlaIV GGNNCC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 69, 222
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 2 cut(s) 158, 272
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 135, 237
SatI GCNGC 2 cut(s) 68, 221
Sau3AI GATC 4 cut(s) 34, 158, 195, 272
SetI ASST 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 111
Sse9I AATT 2 cut(s) 165, 318
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 77, 205
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 165, 318
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 2 cut(s) 135, 237
Tru9I TTAA 2 cut(s) 135, 237
TscAI CASTG 2 cut(s) 19, 222
TseI GCWGC 2 cut(s) 67, 220
TspDTI ATGAA 3 cut(s) 56, 91, 167
TspRI CASTG 2 cut(s) 19, 222
XapI RAATTY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 205
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.