RchiOBHm_Chr4g0392651

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001168
Physical Location & Seq
Reverse (-)
8205253 .. 8205402
150 bp
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UTR
Exon/CDS
Intron
PRQ36538

Sequence Viewer

Length: 150 bp
ATGGTGTCTTCATGCACTTCGAAGATAATGCCTGGTGTTATTGTCAATCCAAAGGGAGAAATGAAAGGATCTGCAATTACTGGTCCTATTGGGAAGGAGTATGCTGATCTATGGCCGAGGATTGCCAGTGCTGCTAATGCCATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

49

Amino Acids

5.06

Weight (kDa)

9.03

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 12 - 49 5.7e-08 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 113
AjnI CCWGG 1 cut(s) 31
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 33
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 85, 126
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 85, 126
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 115
BsnI GGCC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 68, 106
BspANI GGCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 20
BsrI ACTGG 2 cut(s) 85, 126
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 68, 106
Bst2UI CCWGG 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 20
BstKTI GATC 2 cut(s) 71, 109
BstMBI GATC 2 cut(s) 68, 106
BstMWI GCNNNNNNNGC 2 cut(s) 131, 137
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 83
CviAII CATG 1 cut(s) 12
CviJI RGCY 1 cut(s) 115
CviKI_1 RGCY 1 cut(s) 115
DpnI GATC 2 cut(s) 70, 108
DpnII GATC 2 cut(s) 68, 106
EaeI YGGCCR 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 102, 112
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 15, 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 137
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 2 cut(s) 68, 106
LpnPI CCDG 4 cut(s) 18, 45, 66, 139
Lsp1109I GCAGC 1 cut(s) 118
MalI GATC 2 cut(s) 70, 108
MboI GATC 2 cut(s) 68, 106
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 75
MnlI CCTC 1 cut(s) 111
MseI TTAA 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 131, 137
NdeII GATC 2 cut(s) 68, 106
NlaIII CATG 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 141
NspV TTCGAA 1 cut(s) 20
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 1 cut(s) 148
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 68, 106
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 20
SgeI CNNG 6 cut(s) 24, 44, 45, 93, 129, 138
SinI GGWCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 75
Tru1I TTAA 1 cut(s) 148
Tru9I TTAA 1 cut(s) 148
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.