Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001864.1

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

36739 .. 37044

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001864.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcgaagcaagggaggggaggggaggccaggaacaagttccggatgtcgctgggtctgccagtggcggtgatgatcaactacgccgataacaccagagccatgaacatctacatcatatcagtgaaggggatcaaggggcacctcaaccatctgtcatcggcctgtgtctgcgacatggtgatggccttcgtgaagaagggaaagcaggatctacggaagaaggtgttgtcggccgtggtggtccgtcagcgcaagccctggcgccgaaaggacgaagtgttcatgtactttgaggacgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

101

Amino Acids

11.59

Weight (kDa)

10.13

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	140, 219
AcoI	YGGCCR	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	29, 260
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	2 cut(s)	140, 219
Aor13HI	TCCGGA	1 cut(s)	42
AoxI	GGCC	4 cut(s)	27, 162, 186, 234
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	255, 267
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	82, 193
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	2 cut(s)	141, 264
BccI	CCATC	2 cut(s)	159, 178
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	31, 262
BclI	TGATCA	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	31, 262
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	143, 266
BmrFI	CCNGG	2 cut(s)	31, 262
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	237, 260
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	31, 262
BseDI	CCNNGG	2 cut(s)	237, 260
BseGI	GGATG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	144
BseX3I	CGGCCG	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	29, 164, 188, 236
BshNI	GGYRCC	2 cut(s)	141, 264
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	43
BsnI	GGCC	4 cut(s)	29, 164, 188, 236
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	75, 132, 211
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	4 cut(s)	29, 164, 188, 236
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	143, 266
BspPI	GGATC	2 cut(s)	140, 219
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	237, 260
BssMI	GATC	3 cut(s)	75, 132, 211
BssNI	GRCGYC	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	31, 262
BstACI	GRCGYC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	255, 267
BstKTI	GATC	3 cut(s)	78, 135, 214
BstMBI	GATC	3 cut(s)	75, 132, 211
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	31, 262
BstSCI	CCNGG	2 cut(s)	29, 260
BstSLI	GKGCMC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	29, 164, 188, 236
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	69, 129
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	2 cut(s)	255, 267
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	103, 178, 286
CviJI	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviKI_1	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviQI	GTAC	1 cut(s)	289
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	3 cut(s)	77, 134, 213
DpnII	GATC	3 cut(s)	75, 132, 211
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	29, 260
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	3 cut(s)	106, 181, 289
FaiI	YATR	4 cut(s)	104, 119, 179, 287
FatI	CATG	3 cut(s)	102, 177, 285
FbaI	TGATCA	1 cut(s)	75
FokI	GGATG	1 cut(s)	58
GlaI	GCGC	2 cut(s)	254, 266
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	29, 164, 188, 236
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	2 cut(s)	255, 267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	106, 181, 289
Hin6I	GCGC	2 cut(s)	253, 265
HinP1I	GCGC	2 cut(s)	253, 265
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	82, 193
Hpy188III	TCNNGA	2 cut(s)	43, 193
HpyAV	CCTTC	4 cut(s)	121, 193, 199, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	106, 181, 289
HspAI	GCGC	2 cut(s)	253, 265
KasI	GGCGCC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	75, 132, 211
MalI	GATC	3 cut(s)	77, 134, 213
MboI	GATC	3 cut(s)	75, 132, 211
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	144
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	9, 14, 19, 155, 289
MroI	TCCGGA	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	122, 182
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	31, 262
MvaI	CCWGG	2 cut(s)	31, 262
MwoI	GCNNNNNNNGC	1 cut(s)	58
NarI	GGCGCC	1 cut(s)	265
NdeII	GATC	3 cut(s)	75, 132, 211
NlaIII	CATG	3 cut(s)	106, 181, 289
NlaIV	GGNNCC	2 cut(s)	143, 266
PdmI	GAANNNNTTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	29, 260
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	29, 260
PspN4I	GGNNCC	2 cut(s)	143, 266
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
Sau3AI	GATC	3 cut(s)	75, 132, 211
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	31, 262
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	147, 228
SfoI	GGCGCC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
SsiI	CCGC	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	29, 260
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	288
TscAI	CASTG	2 cut(s)	69, 129
TspDTI	ATGAA	2 cut(s)	119, 274
TspGWI	ACGGA	2 cut(s)	232, 236
TspRI	CASTG	2 cut(s)	69, 129
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.