Rh2DG657800

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001168
Physical Location & Seq
Forward (+)
88393950 .. 88410451
16502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG657800.1

Sequence Viewer

Length: 483 bp
ATGAGAGTGGTAAAATTGGTGAAGATCCTAAAGGGATGGTACTGCAATCCGAGACTACATCCATGTGATATGGACTTAGCAGATGGCCATATTGCTGCTCTTCAGAAGCTTTTTACTACAGAGAATACAGGTTGTATTGCCTACAACCTGGGAACTGGACAAGGTAAGGAGTTGAAGCTGAAGATGGGTATGGATATGTGGCAGGTTGGTAAGGAGGATATGAACTATAAGGATCTGCAGGAAATGATATCATGCAAAGAAAGACTCAATTTTGACATATGCCATCAAGTTGGATCTCAGACCATGTCGAAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTTTTCATGTACTTCGAAGATAATGCTGGTGTCGTTGTGAATCCAAAGGGTGAAATGAAAGGATCTGCTATCACTGGGCCTATTGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCAGCTAATGCCATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

160

Amino Acids

17.99

Weight (kDa)

8.88

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 103 - 160 2.2e-17 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 324
AclWI GGATC 4 cut(s) 19, 240, 301, 409
AcoI YGGCCR 2 cut(s) 85, 446
AcuI CTGAAG 2 cut(s) 86, 200
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 2 cut(s) 41, 350
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 109, 178, 467
AluI AGCT 3 cut(s) 109, 178, 467
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 4 cut(s) 19, 240, 301, 409
AoxI GGCC 3 cut(s) 85, 416, 446
ApeKI GCWGC 2 cut(s) 95, 464
AspLEI GCGC 3 cut(s) 315, 327, 437
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 31, 401
AsuII TTCGAA 1 cut(s) 354
BalI TGGCCA 2 cut(s) 87, 448
BanI GGYRCC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 82, 476
BccI CCATC 5 cut(s) 30, 77, 178, 291, 329
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 2 cut(s) 117, 236
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 96, 465
BlsI GCNGC 2 cut(s) 97, 466
Bme1390I CCNGG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 148, 320
Bse1I ACTGG 2 cut(s) 160, 418
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 148, 320
BseGI GGATG 3 cut(s) 41, 58, 340
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 160, 418
BseXI GCAGC 2 cut(s) 82, 476
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 3 cut(s) 87, 418, 448
BshNI GGYRCC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 3 cut(s) 87, 418, 448
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 24, 232, 293, 401, 439
BspANI GGCC 3 cut(s) 87, 418, 448
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 326
BspMAI CTGCAG 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 4 cut(s) 19, 240, 301, 409
BspQI GCTCTTC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 160, 418
BssECI CCNNGG 2 cut(s) 148, 320
BssMI GATC 5 cut(s) 24, 232, 293, 401, 439
BssNI GRCGYC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 325
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 76, 297
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 3 cut(s) 41, 58, 340
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 3 cut(s) 315, 327, 437
BstKTI GATC 5 cut(s) 27, 235, 296, 404, 442
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 24, 232, 293, 401, 439
BstMWI GCNNNNNNNGC 2 cut(s) 464, 470
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 2 cut(s) 117, 236
BstV1I GCAGC 2 cut(s) 82, 476
BstX2I RGATCY 4 cut(s) 24, 232, 293, 401
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 4 cut(s) 24, 232, 293, 401
BsuRI GGCC 3 cut(s) 87, 418, 448
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 41, 58, 340
BtsIMutI CAGTG 1 cut(s) 411
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 317
CfoI GCGC 3 cut(s) 315, 327, 437
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 2 cut(s) 40, 349
CviAII CATG 4 cut(s) 63, 252, 304, 346
CviJI RGCY 7 cut(s) 87, 109, 178, 319, 418, 448, 467
CviKI_1 RGCY 7 cut(s) 87, 109, 178, 319, 418, 448, 467
CviQI GTAC 2 cut(s) 40, 349
DdeI CTNAG 2 cut(s) 76, 297
DinI GGCGCC 1 cut(s) 326
DpnI GATC 5 cut(s) 26, 234, 295, 403, 441
DpnII GATC 5 cut(s) 24, 232, 293, 401, 439
EaeI YGGCCR 2 cut(s) 85, 446
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 86, 200
EcoRII CCWGG 1 cut(s) 147
EcoRV GATATC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
FaeI CATG 4 cut(s) 66, 255, 307, 349
FatI CATG 4 cut(s) 62, 251, 303, 345
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 96, 465
FokI GGATG 3 cut(s) 45, 48, 347
Fsp4HI GCNGC 2 cut(s) 96, 465
FspBI CTAG 1 cut(s) 459
GlaI GCGC 3 cut(s) 314, 326, 436
GluI GCNGC 2 cut(s) 96, 465
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 87, 418, 448
HhaI GCGC 3 cut(s) 315, 327, 437
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 4 cut(s) 66, 255, 307, 349
Hin6I GCGC 3 cut(s) 313, 325, 435
HinP1I GCGC 3 cut(s) 313, 325, 435
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 264, 379
HphI GGTGA 2 cut(s) 31, 401
Hpy188I TCNGA 3 cut(s) 51, 105, 300
HpyAV CCTTC 1 cut(s) 421
HpyCH4V TGCA 4 cut(s) 45, 238, 255, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 470
HpyF3I CTNAG 2 cut(s) 76, 297
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 4 cut(s) 66, 255, 307, 349
HspAI GCGC 3 cut(s) 313, 325, 435
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 5 cut(s) 24, 232, 293, 401, 439
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 114, 134, 141, 161, 188, 224, 351, 399
Lsp1109I GCAGC 2 cut(s) 82, 476
MaeI CTAG 1 cut(s) 459
MalI GATC 5 cut(s) 26, 234, 295, 403, 441
MboI GATC 5 cut(s) 24, 232, 293, 401, 439
MboII GAAGA 4 cut(s) 34, 92, 193, 368
MflI RGATCY 4 cut(s) 24, 232, 293, 401
MlsI TGGCCA 2 cut(s) 87, 448
MluCI AATT 3 cut(s) 14, 268, 453
MluNI TGGCCA 2 cut(s) 87, 448
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 208
Mox20I TGGCCA 2 cut(s) 87, 448
MscI TGGCCA 2 cut(s) 87, 448
MseI TTAA 1 cut(s) 481
MslI CAYNNNNRTG 1 cut(s) 63
Msp20I TGGCCA 2 cut(s) 87, 448
MspR9I CCNGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 464, 470
NarI GGCGCC 1 cut(s) 325
NdeI CATATG 1 cut(s) 278
NdeII GATC 5 cut(s) 24, 232, 293, 401, 439
NlaIII CATG 4 cut(s) 66, 255, 307, 349
NlaIV GGNNCC 1 cut(s) 326
NspV TTCGAA 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 97, 466
PleI GAGTC 1 cut(s) 258
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 4 cut(s) 24, 232, 293, 401
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 2 cut(s) 41, 350
RsaNI GTAC 2 cut(s) 40, 349
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 2 cut(s) 96, 465
Sau3AI GATC 5 cut(s) 24, 232, 293, 401, 439
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 149
SetI ASST 7 cut(s) 111, 133, 150, 166, 180, 207, 469
SfcI CTRYAG 2 cut(s) 117, 236
SfoI GGCGCC 1 cut(s) 326
SfuI TTCGAA 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 3 cut(s) 14, 268, 453
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 147
TaqI TCGA 2 cut(s) 308, 354
TasI AATT 3 cut(s) 14, 268, 453
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TscAI CASTG 1 cut(s) 418
TseI GCWGC 2 cut(s) 95, 464
TspDTI ATGAA 3 cut(s) 236, 334, 410
TspRI CASTG 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 304
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.