Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Forward (+)

39641262 .. 39642102

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAGGAAATGATATCATGCAAAGAAAGACTCAATTTTGACATATGCCATCAAGTTGGATCTCAGACCATGTCGAAGCGAGGGCGCGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACATCGGTGCCAAGAATCTCTACATTATCTCTGTGAAGGGAATCAAGGGTCGTCTGAACCGGTTGCCGTCGGCTTGTGTGGGTGACATGGTCATGGCCACTGTGAAGAAAGGAAAGCCGGACCTCAGGAAGAAGGTGCTGCCAGCTGTCATTGTGAGGCAGCGCAAGCCGTGGCGCCGAAAGGATGGTGTTTTCATGTACTTCGAAGATAATGCTGGTGTCATTGTGAATCCAAAGGGTGAAATGAAAGGATCTGCTATCACTGGGCCTATTGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCAGCTAATGCCATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

163

Amino Acids

17.69

Weight (kDa)

10.12

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	44 - 163	2.7e-40	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 333
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	2 cut(s)	87, 137
AclWI	GGATC	2 cut(s)	67, 418
AcoI	YGGCCR	2 cut(s)	255, 455
AcyI	GRCGYC	1 cut(s)	334
AfaI	GTAC	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	219
AluBI	AGCT	2 cut(s)	305, 476
AluI	AGCT	2 cut(s)	305, 476
AlwI	GGATC	2 cut(s)	67, 418
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	3 cut(s)	255, 425, 455
ApeKI	GCWGC	3 cut(s)	298, 319, 473
AsiGI	ACCGGT	1 cut(s)	219
AspLEI	GCGC	5 cut(s)	87, 155, 324, 336, 446
AspS9I	GGNCC	2 cut(s)	280, 425
AsuHPI	GGTGA	3 cut(s)	157, 254, 410
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	284
BalI	TGGCCA	2 cut(s)	257, 457
BanI	GGYRCC	2 cut(s)	167, 333
BbvI	GCAGC	3 cut(s)	285, 331, 485
BccI	CCATC	2 cut(s)	57, 338
BceAI	ACGGC	2 cut(s)	211, 313
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	4 cut(s)	138, 299, 320, 474
BlsI	GCNGC	4 cut(s)	139, 300, 321, 475
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	280, 425
BmiI	GGNNCC	2 cut(s)	169, 335
BmrI	ACTGGG	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	111, 219
Bse118I	RCCGGY	2 cut(s)	130, 219
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	120, 349
BseMII	CTCAG	2 cut(s)	77, 298
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	285, 331, 485
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	257, 427, 457
BshNI	GGYRCC	2 cut(s)	167, 333
BshTI	ACCGGT	1 cut(s)	219
BsiSI	CCGG	5 cut(s)	99, 112, 131, 220, 278
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	257, 427, 457
Bsp119I	TTCGAA	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	59, 410, 448
BspACI	CCGC	2 cut(s)	87, 137
BspANI	GGCC	3 cut(s)	257, 427, 457
BspCNI	CTCAG	2 cut(s)	76, 297
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	169, 335
BspPI	GGATC	2 cut(s)	67, 418
BspT104I	TTCGAA	1 cut(s)	363
BspT107I	GGYRCC	2 cut(s)	167, 333
BsrFI	RCCGGY	2 cut(s)	130, 219
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	130, 219
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	59, 410, 448
BssNI	GRCGYC	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	145, 262
BstACI	GRCGYC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	303, 326
BstDEI	CTNAG	2 cut(s)	63, 284
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	120, 349
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	5 cut(s)	87, 155, 324, 336, 446
BstKTI	GATC	3 cut(s)	62, 413, 451
BstMBI	GATC	3 cut(s)	59, 410, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 325, 473, 479
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	285, 331, 485
BstX2I	RGATCY	2 cut(s)	59, 410
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	2 cut(s)	59, 410
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	257, 427, 457
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	120, 349
BtsIMutI	CAGTG	2 cut(s)	258, 420
Cac8I	GCNNGC	2 cut(s)	303, 326
CfoI	GCGC	5 cut(s)	87, 155, 324, 336, 446
Cfr10I	RCCGGY	2 cut(s)	130, 219
Cfr13I	GGNCC	2 cut(s)	280, 425
Csp6I	GTAC	1 cut(s)	358
CspAI	ACCGGT	1 cut(s)	219
CviAII	CATG	5 cut(s)	18, 70, 247, 253, 355
CviJI	RGCY	8 cut(s)	233, 257, 277, 305, 328, 427, 457, 476
CviKI_1	RGCY	8 cut(s)	233, 257, 277, 305, 328, 427, 457, 476
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	63, 284
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	3 cut(s)	61, 412, 450
DpnII	GATC	3 cut(s)	59, 410, 448
EaeI	YGGCCR	2 cut(s)	255, 455
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
FaeI	CATG	5 cut(s)	21, 73, 250, 256, 358
FaiI	YATR	8 cut(s)	19, 44, 46, 71, 248, 254, 356, 485
FatI	CATG	5 cut(s)	17, 69, 246, 252, 354
FauNDI	CATATG	1 cut(s)	44
Fnu4HI	GCNGC	4 cut(s)	138, 299, 320, 474
FokI	GGATG	2 cut(s)	127, 356
Fsp4HI	GCNGC	4 cut(s)	138, 299, 320, 474
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	5 cut(s)	86, 154, 323, 335, 445
GluI	GCNGC	4 cut(s)	138, 299, 320, 474
GsaI	CCCAGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	3 cut(s)	257, 427, 457
HapII	CCGG	5 cut(s)	99, 112, 131, 220, 278
HhaI	GCGC	5 cut(s)	87, 155, 324, 336, 446
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	21, 73, 250, 256, 358
Hin6I	GCGC	5 cut(s)	85, 153, 322, 334, 444
HinP1I	GCGC	5 cut(s)	85, 153, 322, 334, 444
HinfI	GANTC	4 cut(s)	30, 175, 201, 388
HpaII	CCGG	5 cut(s)	99, 112, 131, 220, 278
HphI	GGTGA	3 cut(s)	157, 254, 410
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	66, 216
Hpy188III	TCNNGA	2 cut(s)	112, 286
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	145, 232
HpyAV	CCTTC	3 cut(s)	190, 286, 430
HpyCH4III	ACNGT	2 cut(s)	145, 262
HpyCH4V	TGCA	3 cut(s)	4, 21, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 325, 473, 479
HpyF3I	CTNAG	2 cut(s)	63, 284
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	5 cut(s)	21, 73, 250, 256, 358
HspAI	GCGC	5 cut(s)	85, 153, 322, 334, 444
KasI	GGCGCC	1 cut(s)	333
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	59, 410, 448
Lsp1109I	GCAGC	3 cut(s)	285, 331, 485
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	61, 412, 450
MboI	GATC	3 cut(s)	59, 410, 448
MboII	GAAGA	3 cut(s)	277, 301, 377
MflI	RGATCY	2 cut(s)	59, 410
MlsI	TGGCCA	2 cut(s)	257, 457
MluCI	AATT	2 cut(s)	34, 462
MluNI	TGGCCA	2 cut(s)	257, 457
Mly113I	GGCGCC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	74, 83, 293, 309
Mox20I	TGGCCA	2 cut(s)	257, 457
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	2 cut(s)	257, 457
MseI	TTAA	1 cut(s)	490
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	2 cut(s)	257, 457
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	5 cut(s)	99, 112, 131, 220, 278
Mva1269I	GAATGC	1 cut(s)	446
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	127, 325, 473, 479
NarI	GGCGCC	1 cut(s)	334
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	59, 410, 448
NlaIII	CATG	5 cut(s)	21, 73, 250, 256, 358
NlaIV	GGNNCC	2 cut(s)	169, 335
NmuCI	GTSAC	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	363
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	175, 201, 388
PflFI	GACNNNGTC	2 cut(s)	70, 248
PinAI	ACCGGT	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	139, 300, 321, 475
PleI	GAGTC	1 cut(s)	24
PluTI	GGCGCC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	169, 335
PspPI	GGNCC	2 cut(s)	280, 425
PsuI	RGATCY	2 cut(s)	59, 410
PsyI	GACNNNGTC	2 cut(s)	70, 248
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	4 cut(s)	138, 299, 320, 474
Sau3AI	GATC	3 cut(s)	59, 410, 448
Sau96I	GGNCC	2 cut(s)	280, 425
SchI	GAGTC	1 cut(s)	24
SetI	ASST	4 cut(s)	285, 297, 307, 478
SfoI	GGCGCC	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	34, 462
SsiI	CCGC	2 cut(s)	87, 137
SspDI	GGCGCC	1 cut(s)	333
SspMI	CTAG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	145, 262
TaqI	TCGA	2 cut(s)	74, 363
TasI	AATT	2 cut(s)	34, 462
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	3 cut(s)	175, 201, 388
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TscAI	CASTG	2 cut(s)	265, 427
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	298, 319, 473
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	343, 419
TspRI	CASTG	2 cut(s)	265, 427
Tth111I	GACNNNGTC	2 cut(s)	70, 248
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.