Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004445.1

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

1099 .. 1404

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcgaagcaagggaggggagggtcagccaggaacaagttctggatgtcgctgggtctgcccgtggcggtgacgatcaactgccccgacaacaccagagccatgaacatctacatcatatcagttaaggggatcaaggggcgccttaatagtctgtcgtcggcctgcgccggcgacatggtgatggccatcgtgaagaagggaaagcaggatctgaggaagaaggtgatgtcggctgtggtggtccgtcagcgcaagccttggtgccgaaaggacgaagtgttcatgtactttgaggacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

10.26

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	140, 219
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	2 cut(s)	140, 219
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	162, 186
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	3 cut(s)	144, 170, 255
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	82, 193, 238
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	141, 264
BccI	CCATC	2 cut(s)	178, 197
BciT130I	CCWGG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	143, 266
BmrFI	CCNGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	63, 260
Bse118I	RCCGGY	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	63, 260
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	164, 188
BshNI	GGYRCC	2 cut(s)	141, 264
BsiSI	CCGG	1 cut(s)	171
BsnI	GGCC	2 cut(s)	164, 188
Bsp143I	GATC	3 cut(s)	75, 132, 211
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	164, 188
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	143, 266
BspPI	GGATC	2 cut(s)	140, 219
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	63, 260
BssMI	GATC	3 cut(s)	75, 132, 211
BssNI	GRCGYC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	166, 172, 257
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	3 cut(s)	144, 170, 255
BstKTI	GATC	3 cut(s)	78, 135, 214
BstMBI	GATC	3 cut(s)	75, 132, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	164, 188
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	166, 172, 257
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	3 cut(s)	144, 170, 255
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	103, 178, 286
CviJI	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviKI_1	RGCY	6 cut(s)	29, 101, 164, 188, 236, 259
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	143
DpnI	GATC	3 cut(s)	77, 134, 213
DpnII	GATC	3 cut(s)	75, 132, 211
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	143
EheI	GGCGCC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	106, 181, 289
FaiI	YATR	4 cut(s)	104, 119, 179, 287
FatI	CATG	3 cut(s)	102, 177, 285
FokI	GGATG	1 cut(s)	58
GlaI	GCGC	3 cut(s)	143, 169, 254
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	164, 188
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	3 cut(s)	144, 170, 255
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	3 cut(s)	106, 181, 289
Hin6I	GCGC	3 cut(s)	142, 168, 253
HinP1I	GCGC	3 cut(s)	142, 168, 253
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	82, 193, 238
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	43, 193
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	193, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	106, 181, 289
HspAI	GCGC	3 cut(s)	142, 168, 253
KasI	GGCGCC	1 cut(s)	141
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	75, 132, 211
LpnPI	CCDG	8 cut(s)	16, 28, 38, 43, 109, 178, 184, 194
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	77, 134, 213
MboI	GATC	3 cut(s)	75, 132, 211
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	9, 14, 210, 289
Mox20I	TGGCCA	1 cut(s)	188
MreI	CGCCGGCG	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	126, 147
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	142
NdeII	GATC	3 cut(s)	75, 132, 211
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	106, 181, 289
NlaIV	GGNNCC	2 cut(s)	143, 266
NmuCI	GTSAC	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	143, 266
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	126, 147
Sau3AI	GATC	3 cut(s)	75, 132, 211
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	143
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	182
SsiI	CCGC	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	126, 147
Tru9I	TTAA	2 cut(s)	126, 147
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	119, 274
TspGWI	ACGGA	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.