pycom16g18840

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001168
Physical Location & Seq
Reverse (-)
15623826 .. 15624851
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g18840.1

Sequence Viewer

Length: 615 bp
ATGAAACGTCGGCCTTCTGTGGATATCTTCGACAACGATGAAGAAAGAAGGCCTTCTGAAAAGCCCACTACCCAGCGAGGCCACAATGTTGAAGAGGCCCACGATCTATTTGGTATTTTAAGAAAAGAGGATGGAGCGAATTGTAACTTGACAAAGTTTTACCCGGCAGAAAACCCTACGCCGCTCTCCCTCTATATATATACATTTGCTAAACCCTACCATTCTCTCAGTCTCCTTTCCGCAGCAGCCAAGATGTCGAAGCGAGGGCGTGGAGGGTCCGCTGGAAACAAGTTTAGGATGTCACTGGGTCTTCCAGTGGCAGCCACTGTGAACTGTGCCGATAACACCGGAGCTAAGAATCTTTACATCATATCCGTGAAGGGAATCAAGGGTCGTTTGAATAGGTTGCCATCTGCTTGCGTTGGTGACATGGTCATGGCCACTGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTCCTACCTGCTGTCATCGTGAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTCATGTACTTTGAAGGTCAATATTATTACCTTTGTTCATTAATGTGTCATAATGTTTCTGATTATGTTATTATCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

9.79

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 105 - 183 7.9e-24 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 3 cut(s) 182, 240, 279
AcoI YGGCCR 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 1 cut(s) 542
AgsI TTSAA 3 cut(s) 92, 400, 548
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 5 cut(s) 11, 50, 79, 96, 438
ApeKI GCWGC 4 cut(s) 242, 245, 320, 502
AseI ATTAAT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 52
AspLEI GCGC 2 cut(s) 507, 519
AspS9I GGNCC 3 cut(s) 97, 276, 478
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 276, 478
AxyI CCTNAGG 1 cut(s) 467
BalI TGGCCA 1 cut(s) 440
BanI GGYRCC 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 302, 526
BbvI GCAGC 4 cut(s) 254, 257, 332, 514
BccI CCATC 3 cut(s) 125, 418, 521
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 5 cut(s) 182, 243, 246, 321, 503
BlsI GCNGC 5 cut(s) 183, 244, 247, 322, 504
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 276, 478
BmgT120I GGNCC 3 cut(s) 97, 276, 478
BmiI GGNNCC 2 cut(s) 277, 518
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 2 cut(s) 302, 526
BpuMI CCSGG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 309, 314
Bse21I CCTNAGG 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 3 cut(s) 136, 303, 532
BseMII CTCAG 2 cut(s) 241, 481
BseNI ACTGG 2 cut(s) 309, 314
BseXI GCAGC 4 cut(s) 254, 257, 332, 514
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 5 cut(s) 13, 52, 81, 98, 440
BshNI GGYRCC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 164, 348
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 5 cut(s) 13, 52, 81, 98, 440
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 3 cut(s) 182, 240, 279
BspANI GGCC 5 cut(s) 13, 52, 81, 98, 440
BspCNI CTCAG 2 cut(s) 240, 480
BspLI GGNNCC 2 cut(s) 277, 518
BspMI ACCTGC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 2 cut(s) 309, 314
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 328, 335, 445
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 418, 509
BstDEI CTNAG 3 cut(s) 227, 354, 467
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 3 cut(s) 136, 303, 532
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 507, 519
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 254, 257, 332, 514
BstV2I GAAGAC 2 cut(s) 302, 526
Bsu36I CCTNAGG 1 cut(s) 467
BsuRI GGCC 5 cut(s) 13, 52, 81, 98, 440
BtgI CCRYGG 1 cut(s) 512
BtsCI GGATG 3 cut(s) 136, 303, 532
BtsIMutI CAGTG 4 cut(s) 302, 321, 324, 441
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 418, 509
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 2 cut(s) 507, 519
Cfr13I GGNCC 3 cut(s) 97, 276, 478
Csp6I GTAC 1 cut(s) 541
CviAII CATG 4 cut(s) 430, 436, 513, 538
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 227, 354, 467
DinI GGCGCC 1 cut(s) 518
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 512
Eco147I AGGCCT 1 cut(s) 52
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 276, 478
Eco81I CCTNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 478
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 512
EgeI GGCGCC 1 cut(s) 518
EheI GGCGCC 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 4 cut(s) 433, 439, 516, 541
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 4 cut(s) 429, 435, 512, 537
Fnu4HI GCNGC 5 cut(s) 182, 243, 246, 321, 503
FokI GGATG 3 cut(s) 143, 310, 539
Fsp4HI GCNGC 5 cut(s) 182, 243, 246, 321, 503
GlaI GCGC 2 cut(s) 506, 518
GluI GCNGC 5 cut(s) 182, 243, 246, 321, 503
GsaI CCCAGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 5 cut(s) 13, 52, 81, 98, 440
HapII CCGG 2 cut(s) 164, 348
HhaI GCGC 2 cut(s) 507, 519
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 4 cut(s) 433, 439, 516, 541
Hin6I GCGC 2 cut(s) 505, 517
HinP1I GCGC 2 cut(s) 505, 517
HinfI GANTC 2 cut(s) 358, 384
HpaII CCGG 2 cut(s) 164, 348
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 58, 595
Hpy188III TCNNGA 3 cut(s) 448, 469, 496
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 7 cut(s) 24, 42, 63, 373, 445, 469, 542
HpyCH4III ACNGT 3 cut(s) 328, 335, 445
HpyCH4IV ACGT 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpyF3I CTNAG 3 cut(s) 227, 354, 467
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 4 cut(s) 433, 439, 516, 541
HspAI GCGC 2 cut(s) 505, 517
KasI GGCGCC 1 cut(s) 516
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 134, 350
LpnPI CCDG 9 cut(s) 86, 177, 267, 290, 327, 361, 454, 474, 498
Lsp1109I GCAGC 4 cut(s) 254, 257, 332, 514
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 143, 300, 425
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 184
MboI GATC 1 cut(s) 103
MboII GAAGA 6 cut(s) 19, 53, 104, 302, 484, 526
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 440
Mly113I GGCGCC 1 cut(s) 517
MnlI CCTC 8 cut(s) 71, 88, 121, 200, 257, 266, 476, 492
Mox20I TGGCCA 1 cut(s) 440
MroXI GAANNNNTTC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 440
MseI TTAA 2 cut(s) 119, 575
MslI CAYNNNNRTG 3 cut(s) 374, 434, 577
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 164, 348
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 508
NarI GGCGCC 1 cut(s) 517
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 1 cut(s) 512
NdeII GATC 1 cut(s) 103
NlaIII CATG 4 cut(s) 433, 439, 516, 541
NlaIV GGNNCC 2 cut(s) 277, 518
NmuCI GTSAC 2 cut(s) 300, 425
PceI AGGCCT 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 358, 384
PflFI GACNNNGTC 1 cut(s) 431
PkrI GCNGC 5 cut(s) 183, 244, 247, 322, 504
PluTI GGCGCC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 277, 518
PspPI GGNCC 3 cut(s) 97, 276, 478
PspPPI RGGWCCY 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 431
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 3 cut(s) 374, 434, 577
SaqAI TTAA 2 cut(s) 119, 575
SatI GCNGC 5 cut(s) 182, 243, 246, 321, 503
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 97, 276, 478
ScrFI CCNGG 1 cut(s) 164
SetI ASST 9 cut(s) 10, 355, 407, 463, 468, 480, 487, 553, 567
SfoI GGCGCC 1 cut(s) 518
SinI GGWCC 2 cut(s) 276, 478
SmiMI CAYNNNNRTG 3 cut(s) 374, 434, 577
Sse9I AATT 1 cut(s) 139
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 3 cut(s) 182, 240, 279
SspDI GGCGCC 1 cut(s) 516
SspI AATATT 1 cut(s) 557
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 3 cut(s) 328, 335, 445
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 30, 257
TasI AATT 1 cut(s) 139
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 2 cut(s) 358, 384
Tru1I TTAA 2 cut(s) 119, 575
Tru9I TTAA 2 cut(s) 119, 575
TscAI CASTG 4 cut(s) 309, 321, 331, 448
TseFI GTSAC 2 cut(s) 300, 425
TseI GCWGC 4 cut(s) 242, 245, 320, 502
Tsp45I GTSAC 2 cut(s) 300, 425
TspDTI ATGAA 4 cut(s) 17, 54, 526, 561
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 4 cut(s) 309, 321, 331, 448
Tth111I GACNNNGTC 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 276, 478
VspI ATTAAT 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.