Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001168

Physical Location & Seq

Genomic Coordinates Reverse (-)

4095311 .. 4095748

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1060900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCGAAGCGAGGGCGTGGAGGGTCCGCTGGAAACAAGTTTAGGATGTCACTGGGTATTCCAGTGGCAGCCACTGTGAACTGTGCCGATAACACCGGAGCTAAGAATCTTTACATCATTCCCGTGAAGGGGATCAATGGTCGTTTGAGCAGGTTGCCATCTGCTTATGTTGGTGACATGGTCATGGCCACTGTCAATAAGGGAAAGCCTGACCTCAGGAAGAAGGTCCTGCATGCTGTTATCGTGAGGCAGTGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCTGAAAGGGAGAAATGAAAGGGTACTAGTCCGATCGGAAATGAGTGTGCTGATCCCTGGCCTAGGATTGCAAGTGCTGCTAATGCCATTGTCTGAATGTTGCTCTCTGGGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

146

Amino Acids

15.77

Weight (kDa)

10.26

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	20 - 111	3.7e-28	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33370 AT3G04400
fragaria_vesca	FvH4_2g20670 FvH4_4g04460 FvH4_4g04460
malus_domestica	MD04G1231800.v1.1 MD13G1220300.v1.1 MD15G1060900.v1.1 MD16G1225500.v1.1 MD17G1185600.v1.1
prunus_persica	Prupe.1G047000_v2.0.a1 Prupe.6G351200_v2.0.a1
pyrus_communis	pycom04g20510 pycom08g12850 pycom16g18840
rosa_chinensis	RchiOBHm_Chr1g0350421 RchiOBHm_Chr2g0145581 RchiOBHm_Chr3g0449451 RchiOBHm_Chr4g0392651 RchiOBHm_Chr4g0395041 RchiOBHm_Chr4g0395051 RchiOBHm_Chr4g0395091 RchiOBHm_Chr4g0395151 RchiOBHm_Chr4g0395171 RchiOBHm_Chr6g0286851 RchiOBHm_Chr7g0201931
rosa_laevigata	RLG00000009643
rosa_multiflora	Rmu_sc0001864.1_g000007 Rmu_sc0002835.1_g000004 Rmu_sc0004445.1_g000001 Rmu_sc0006211.1_g000006
rosa_roxburghii	Rroxscaffold_5G00340110 Rroxscaffold_6G00427400
rosa_rugosa	Rorug02G0620700 Rorug03G0359400.1 Rorug03G0359600.1 Rorug06G0184000
rosa_samantha	Rh2CG609800 Rh2CG609900 Rh2DG657800 Rh3AG018500 Rh3BG018900 Rh3CG017800 Rh3DG019100 Rh4AG057100 Rh4BG056000 Rh4CG062000 Rh4DG053100 Rh6AG296100 Rh6DG292100 Rh7AG276400 Rh7DG200300
rosa_wichuraiana	Rw1G017950 Rw3G001490 Rw4G004580 Rw4G004600 Rw6G025530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	140, 367
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	2 cut(s)	290, 345
AfiI	CCNNNNNNNGG	3 cut(s)	128, 129, 383
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	2 cut(s)	140, 367
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	186, 379, 430
ApeKI	GCWGC	2 cut(s)	68, 397
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	24, 226, 430
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	24, 226
AvrII	CCTAGG	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	80, 384
BccI	CCATC	2 cut(s)	166, 269
BciT130I	CCWGG	1 cut(s)	378
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	2 cut(s)	347, 383
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	69, 398
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	70, 399
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	24, 226
BmgT120I	GGNCC	3 cut(s)	24, 226, 430
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	260, 376, 382
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 129, 383
Bse1I	ACTGG	2 cut(s)	57, 62
Bse21I	CCTNAGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	260, 376, 382
BseGI	GGATG	2 cut(s)	51, 280
BseLI	CCNNNNNNNGG	3 cut(s)	128, 129, 383
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	57, 62
BseXI	GCAGC	2 cut(s)	80, 384
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	188, 381, 432
BsiEI	CGRYCG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	128, 129, 383
BsnI	GGCC	3 cut(s)	188, 381, 432
Bsp143I	GATC	3 cut(s)	132, 353, 372
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	188, 381, 432
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	140, 367
BsrI	ACTGG	2 cut(s)	57, 62
BssECI	CCNNGG	3 cut(s)	260, 376, 382
BssMI	GATC	3 cut(s)	132, 353, 372
BssT1I	CCWWGG	2 cut(s)	260, 382
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	76, 83, 193
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	234, 257
BstDEI	CTNAG	2 cut(s)	102, 215
BstDSI	CCRYGG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	51, 280
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	3 cut(s)	135, 356, 375
BstMBI	GATC	3 cut(s)	132, 353, 372
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 397, 403, 429
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	80, 384
BstV2I	GAAGAC	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	188, 381, 432
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	51, 280
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	5 cut(s)	50, 69, 72, 189, 257
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	234, 257
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	24, 226, 430
Csp6I	GTAC	2 cut(s)	289, 344
CviAII	CATG	5 cut(s)	178, 184, 233, 261, 286
CviJI	RGCY	7 cut(s)	71, 101, 188, 208, 259, 381, 432
CviKI_1	RGCY	7 cut(s)	71, 101, 188, 208, 259, 381, 432
CviQI	GTAC	2 cut(s)	289, 344
DdeI	CTNAG	2 cut(s)	102, 215
DpnI	GATC	3 cut(s)	134, 355, 374
DpnII	GATC	3 cut(s)	132, 353, 372
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	260, 382
Eco47I	GGWCC	2 cut(s)	24, 226
Eco81I	CCTNAGG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	260, 382
ErhI	CCWWGG	2 cut(s)	260, 382
FaeI	CATG	5 cut(s)	181, 187, 236, 264, 289
FaiI	YATR	6 cut(s)	168, 179, 185, 234, 262, 287
FatI	CATG	5 cut(s)	177, 183, 232, 260, 285
Fnu4HI	GCNGC	2 cut(s)	69, 398
FokI	GGATG	2 cut(s)	58, 287
Fsp4HI	GCNGC	2 cut(s)	69, 398
FspBI	CTAG	2 cut(s)	347, 383
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	69, 398
HaeIII	GGCC	3 cut(s)	188, 381, 432
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	181, 187, 236, 264, 289
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	106, 319
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	324, 353, 358, 415
Hpy188III	TCNNGA	2 cut(s)	217, 244
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	121, 217
HpyCH4III	ACNGT	3 cut(s)	76, 83, 193
HpyCH4V	TGCA	3 cut(s)	232, 255, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 397, 403, 429
HpyF3I	CTNAG	2 cut(s)	102, 215
Hsp92II	CATG	5 cut(s)	181, 187, 236, 264, 289
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	132, 353, 372
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	80, 384
MaeI	CTAG	2 cut(s)	347, 383
MaeIII	GTNAC	2 cut(s)	48, 173
MalI	GATC	3 cut(s)	134, 355, 374
MboI	GATC	3 cut(s)	132, 353, 372
MboII	GAAGA	3 cut(s)	232, 274, 308
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
MnlI	CCTC	4 cut(s)	5, 14, 224, 240
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	256, 397, 403, 429
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	132, 353, 372
NlaIII	CATG	5 cut(s)	181, 187, 236, 264, 289
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	48, 173
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	106, 319
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	70, 399
Ple19I	CGATCG	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	3 cut(s)	24, 226, 430
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	290, 345
RsaNI	GTAC	2 cut(s)	289, 344
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	2 cut(s)	69, 398
Sau3AI	GATC	3 cut(s)	132, 353, 372
Sau96I	GGNCC	3 cut(s)	24, 226, 430
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	4 cut(s)	103, 155, 216, 228
SinI	GGWCC	2 cut(s)	24, 226
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
SpeI	ACTAGT	1 cut(s)	346
SphI	GCATGC	1 cut(s)	236
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	347, 383
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	260, 382
TaaI	ACNGT	3 cut(s)	76, 83, 193
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	106, 319
TscAI	CASTG	5 cut(s)	57, 69, 79, 196, 257
TseFI	GTSAC	2 cut(s)	48, 173
TseI	GCWGC	2 cut(s)	68, 397
Tsp45I	GTSAC	2 cut(s)	48, 173
TspDTI	ATGAA	2 cut(s)	274, 351
TspRI	CASTG	5 cut(s)	57, 69, 79, 196, 257
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	24, 226
XagI	CCTNNNNNAGG	1 cut(s)	381
XceI	RCATGY	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	2 cut(s)	347, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.