Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002001

Physical Location & Seq

Genomic Coordinates Reverse (-)

37507189 .. 37508287

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1242100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTCCTGGGAAGGGGGAGGACAGAGTTGTTTTTAGACGTCCTGAGAAATTGTAAGGGCAGGTATGATTATGGAAGGGAAGAACACAGTAGGAGAAGGAGAGATTGCAGAGATGGTAGTAGTAGTTATGGTAAGGATTGTTGTCGAAGGAAAGAATGTCACTGGTGTGAACAACATCAATGTGGTGGAGATTATGGAAGAAAGCGGAGTAGATACAATATTTCGGGTTCTGGTGCTTCTCCCTGGGATCCCATTTCTTCGTCGCCAGTTCGAATTTGTCCTTCTGGAGACGCGGTTAAATCTTCAAGTTCGAAACATGGTGTGAGTTCTCTTAGAATTACTCTTCATTCAGAAAATGCACAATCATTCGAGGATGGAGAAGGGGACATGGCTGATTTGGACGAAGGACAGAAATATAAGATTAGCGAAAGCATGTGTCTAGAGATGGAATACAATTCTGATCGTGCGTGTTACGATAGGGAAGAAGGAAACACAATGTTTGATACAGTTGATAGCTCGTCTTTGTTTTTTGGAGATGATGCTTCTTTTCAGAAGAAGGAAGCAGAGTTGGAAAAAAGATTGGTTAGAAGGGATGGAACGAAGATGACCCTTGCACAGAGCAAAAAATTGTCTCAGCTCACTTCTAATACCGCGCAGTGGGAGGATCGTCAACTTTGGAGATCTGGTGCTGTTAGAGGGGTTAAGGTGCAGACTGGGTTCAATGATGAAGAAGAGCACAAAGTTCTTCTTCTTGTGCATGATACAAATTTAAAGCATCTTTTCCTCGACGACAGTGTTTTTGTAAAGGATGGGAGTGTTGTTTTTACCAAGCGAGCAGAGCAGATAATGCCAATAAAGGATACTACGTCTGGTATGGCCATAATTTCTCGCAATGTGAAAATTTTCAGGTCGACGGGCCGAGGGCCCACTCTAACAACATCGATACTGTCCCCCCACTTAACCACTTGCACAATCATGAGGGGTTTTATCACAAAAGACCTCAATATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009888 GO:0009892 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010051 GO:0010053 GO:0010054 GO:0010154 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031047 GO:0031050 GO:0031053 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033120 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040007 GO:0040029 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0070887 GO:0070918 GO:0071013 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0098542 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD DUF2075 HA2 Helicase_C OB_NTP_bind

Protein Analysis

338

Amino Acids

38.13

Weight (kDa)

8.23

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13010
fragaria_vesca	FvH4_3g13400 FvH4_4g24000
malus_domestica	MD05G1242000.v1.1 MD05G1242100.v1.1 MD10G1223900.v1.1 MD16G1117100.v1.1
prunus_persica	Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.4G121400_v2.0.a1 Prupe.4G121400_v2.0.a1 Prupe.4G121400_v2.0.a1
pyrus_communis	pycom05g21860 pycom10g18790 pycom16g10030
rosa_chinensis	RchiOBHm_Chr4g0430661 RchiOBHm_Chr4g0431171 RchiOBHm_Chr4g0431521 RchiOBHm_Chr5g0022111 RchiOBHm_Chr5g0066381
rosa_laevigata	RLG00000006909 RLG00000006958 RLG00000032645
rosa_multiflora	Rmu_sc0006966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056820 Rroxscaffold_5G00372400
rosa_rugosa	Rorug04G0245000 Rorug04G0245000 Rorug05G0071400
rosa_samantha	Rh4AG301100 Rh4AG307100 Rh4BG308200 Rh4BG315000 Rh4CG325300 Rh4CG330500 Rh4DG305800 Rh5AG159400 Rh5BG158600 Rh5DG158800
rosa_wichuraiana	Rw4G026140 Rw5G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	911
AccII	CGCG	2 cut(s)	293, 653
AciI	CCGC	3 cut(s)	205, 293, 651
AclWI	GGATC	3 cut(s)	242, 255, 672
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	3 cut(s)	273, 766, 900
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	13, 657
AgsI	TTSAA	2 cut(s)	306, 721
AjnI	CCWGG	2 cut(s)	6, 242
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	516, 637
AluI	AGCT	2 cut(s)	516, 637
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	2 cut(s)	282, 636
AlwI	GGATC	3 cut(s)	242, 255, 672
AoxI	GGCC	3 cut(s)	876, 916, 923
ApaI	GGGCCC	1 cut(s)	927
ApoI	RAATTY	3 cut(s)	273, 766, 900
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
Asp700I	GAANNNNTTC	1 cut(s)	902
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	3 cut(s)	916, 923, 924
AsuII	TTCGAA	2 cut(s)	271, 311
BaeGI	GKGCMC	1 cut(s)	927
BalI	TGGCCA	1 cut(s)	878
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	738
BccI	CCATC	5 cut(s)	107, 368, 439, 587, 803
BciT130I	CCWGG	2 cut(s)	8, 244
BciVI	GTATCC	1 cut(s)	853
BcoDI	GTCTC	2 cut(s)	282, 636
BfaI	CTAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	853
BglII	AGATCT	1 cut(s)	680
Bme1390I	CCNGG	2 cut(s)	8, 244
BmgT120I	GGNCC	3 cut(s)	916, 923, 924
BmiI	GGNNCC	2 cut(s)	249, 925
BmrFI	CCNGG	2 cut(s)	8, 244
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	2 cut(s)	529, 784
BmuI	ACTGGG	1 cut(s)	723
BpmI	CTGGAG	1 cut(s)	306
Bpu14I	TTCGAA	2 cut(s)	271, 311
Bsa29I	ATCGAT	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	7, 242, 243, 919
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 670, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 657
Bse1I	ACTGG	3 cut(s)	167, 266, 718
Bse3DI	GCAATG	1 cut(s)	898
BseBI	CCWGG	2 cut(s)	8, 244
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	4 cut(s)	7, 242, 243, 919
BseGI	GGATG	3 cut(s)	379, 598, 814
BseLI	CCNNNNNNNGG	2 cut(s)	13, 657
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	2 cut(s)	35, 647
BseNI	ACTGG	3 cut(s)	167, 266, 718
BseSI	GKGCMC	1 cut(s)	927
BsgI	GTGCAG	1 cut(s)	728
Bsh1236I	CGCG	2 cut(s)	293, 653
BshFI	GGCC	3 cut(s)	878, 918, 925
BshVI	ATCGAT	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	738
BslFI	GGGAC	2 cut(s)	398, 934
BslI	CCNNNNNNNGG	2 cut(s)	13, 657
BsmAI	GTCTC	2 cut(s)	282, 636
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	398, 934
BsnI	GGCC	3 cut(s)	878, 918, 925
Bsp119I	TTCGAA	2 cut(s)	271, 311
Bsp120I	GGGCCC	1 cut(s)	923
Bsp1286I	GDGCHC	2 cut(s)	738, 927
Bsp143I	GATC	4 cut(s)	247, 460, 664, 680
BspACI	CCGC	3 cut(s)	205, 293, 651
BspANI	GGCC	3 cut(s)	878, 918, 925
BspCNI	CTCAG	2 cut(s)	36, 646
BspDI	ATCGAT	1 cut(s)	941
BspFNI	CGCG	2 cut(s)	293, 653
BspHI	TCATGA	1 cut(s)	975
BspLI	GGNNCC	2 cut(s)	249, 925
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	242, 255, 672
BspQI	GCTCTTC	1 cut(s)	726
BspT104I	TTCGAA	2 cut(s)	271, 311
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	167, 266, 718
BssECI	CCNNGG	4 cut(s)	7, 242, 243, 919
BssMI	GATC	4 cut(s)	247, 460, 664, 680
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	8, 244
Bst4CI	ACNGT	4 cut(s)	89, 508, 794, 948
Bst6I	CTCTTC	2 cut(s)	348, 726
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstBI	TTCGAA	2 cut(s)	271, 311
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	3 cut(s)	44, 332, 633
BstF5I	GGATG	3 cut(s)	379, 598, 814
BstFNI	CGCG	2 cut(s)	293, 653
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	4 cut(s)	250, 463, 667, 683
BstMAI	GTCTC	2 cut(s)	282, 636
BstMBI	GATC	4 cut(s)	247, 460, 664, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	838, 847
BstNI	CCWGG	2 cut(s)	8, 244
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	6, 242
BstSLI	GKGCMC	1 cut(s)	927
BstUI	CGCG	2 cut(s)	293, 653
BstX2I	RGATCY	2 cut(s)	247, 680
BstYI	RGATCY	2 cut(s)	247, 680
Bsu15I	ATCGAT	1 cut(s)	941
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	878, 918, 925
BsuTUI	ATCGAT	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	379, 598, 814
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	3 cut(s)	160, 662, 799
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	834
CciI	TCATGA	1 cut(s)	975
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	916, 923, 924
ClaI	ATCGAT	1 cut(s)	941
CseI	GACGC	1 cut(s)	299
CviAII	CATG	5 cut(s)	317, 388, 433, 758, 976
CviJI	RGCY	6 cut(s)	392, 516, 637, 878, 918, 925
CviKI_1	RGCY	6 cut(s)	392, 516, 637, 878, 918, 925
DdeI	CTNAG	3 cut(s)	44, 332, 633
DpnI	GATC	4 cut(s)	249, 462, 666, 682
DpnII	GATC	4 cut(s)	247, 460, 664, 680
DraI	TTTAAA	1 cut(s)	771
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	348, 726
EarI	CTCTTC	2 cut(s)	348, 726
Eco24I	GRGCYC	1 cut(s)	927
EcoO109I	RGGNCCY	1 cut(s)	923
EcoRII	CCWGG	2 cut(s)	6, 242
EcoT38I	GRGCYC	1 cut(s)	927
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	5 cut(s)	320, 391, 436, 761, 979
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	2 cut(s)	398, 934
FatI	CATG	5 cut(s)	316, 387, 432, 757, 975
FblI	GTMKAC	1 cut(s)	911
FokI	GGATG	3 cut(s)	386, 605, 821
FriOI	GRGCYC	1 cut(s)	927
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	878, 918, 925
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	655
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	320, 391, 436, 761, 979
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	671, 912
HindII	GTYRAC	2 cut(s)	671, 912
Hpy166II	GTNNAC	3 cut(s)	170, 671, 912
Hpy188I	TCNGA	3 cut(s)	352, 460, 552
Hpy188III	TCNNGA	4 cut(s)	43, 285, 440, 976
Hpy8I	GTNNAC	3 cut(s)	170, 671, 912
Hpy99I	CGWCG	3 cut(s)	265, 791, 916
HpyCH4III	ACNGT	4 cut(s)	89, 508, 794, 948
HpyCH4IV	ACGT	2 cut(s)	39, 866
HpyCH4V	TGCA	6 cut(s)	108, 359, 614, 709, 757, 969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	838, 847
HpyF3I	CTNAG	3 cut(s)	44, 332, 633
HpySE526I	ACGT	2 cut(s)	39, 866
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	320, 391, 436, 761, 979
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	4 cut(s)	247, 460, 664, 680
LguI	GCTCTTC	1 cut(s)	726
LweI	GCATC	2 cut(s)	529, 784
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	39, 866
MaeIII	GTNAC	2 cut(s)	158, 470
MalI	GATC	4 cut(s)	249, 462, 666, 682
MboI	GATC	4 cut(s)	247, 460, 664, 680
MflI	RGATCY	2 cut(s)	247, 680
MhlI	GDGCHC	2 cut(s)	738, 927
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	8 cut(s)	49, 273, 336, 454, 626, 766, 882, 900
MluNI	TGGCCA	1 cut(s)	878
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	8 cut(s)	12, 364, 655, 689, 794, 914, 972, 1010
Mox20I	TGGCCA	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	4 cut(s)	297, 702, 770, 959
MslI	CAYNNNNRTG	3 cut(s)	165, 180, 974
Msp20I	TGGCCA	1 cut(s)	878
MspR9I	CCNGG	2 cut(s)	8, 244
MvaI	CCWGG	2 cut(s)	8, 244
MvnI	CGCG	2 cut(s)	293, 653
MwoI	GCNNNNNNNGC	2 cut(s)	838, 847
NdeII	GATC	4 cut(s)	247, 460, 664, 680
NlaIII	CATG	5 cut(s)	320, 391, 436, 761, 979
NlaIV	GGNNCC	2 cut(s)	249, 925
NmeAIII	GCCGAG	1 cut(s)	944
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	2 cut(s)	271, 311
OliI	CACNNNNGTG	1 cut(s)	165
PagI	TCATGA	1 cut(s)	975
PasI	CCCWGGG	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	902
Psp6I	CCWGG	2 cut(s)	6, 242
PspGI	CCWGG	2 cut(s)	6, 242
PspN4I	GGNNCC	2 cut(s)	249, 925
PspOMI	GGGCCC	1 cut(s)	923
PspPI	GGNCC	3 cut(s)	916, 923, 924
PsuI	RGATCY	2 cut(s)	247, 680
RseI	CAYNNNNRTG	3 cut(s)	165, 180, 974
SalI	GTCGAC	1 cut(s)	910
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	297, 702, 770, 959
Sau3AI	GATC	4 cut(s)	247, 460, 664, 680
Sau96I	GGNCC	3 cut(s)	916, 923, 924
ScrFI	CCNGG	2 cut(s)	8, 244
SduI	GDGCHC	2 cut(s)	738, 927
SetI	ASST	8 cut(s)	42, 65, 518, 639, 708, 869, 911, 1002
SfaNI	GCATC	2 cut(s)	529, 784
SfuI	TTCGAA	2 cut(s)	271, 311
SmiMI	CAYNNNNRTG	3 cut(s)	165, 180, 974
Sse9I	AATT	8 cut(s)	49, 273, 336, 454, 626, 766, 882, 900
SsiI	CCGC	3 cut(s)	205, 293, 651
SspI	AATATT	2 cut(s)	220, 1006
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	6, 242
TaaI	ACNGT	4 cut(s)	89, 508, 794, 948
TaiI	ACGT	2 cut(s)	42, 869
TaqI	TCGA	7 cut(s)	145, 271, 311, 369, 786, 911, 941
TasI	AATT	8 cut(s)	49, 273, 336, 454, 626, 766, 882, 900
Tru1I	TTAA	4 cut(s)	297, 702, 770, 959
Tru9I	TTAA	4 cut(s)	297, 702, 770, 959
TscAI	CASTG	3 cut(s)	167, 662, 799
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	335, 741
TspRI	CASTG	3 cut(s)	167, 662, 799
XapI	RAATTY	3 cut(s)	273, 766, 900
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	902
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.