Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002001

Physical Location & Seq

Genomic Coordinates Forward (+)

72466083 .. 72467001

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAGAATAGAGGAAACCCTGAAGCTATTAAGCTAGACAAGACGACGGCGACATCGGAACCCGAGAATAACAGTGGTGGGGGATTATTTGTTCCTGGGAAGGATCGAGTCGTGTATAGACCTCCCGAGAGGAAATCTCTCTTAGATGAGATTTTCATTACCATTTTTCTATTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009888 GO:0009892 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010051 GO:0010053 GO:0010054 GO:0010154 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031047 GO:0031050 GO:0031053 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033120 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040007 GO:0040029 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0070887 GO:0070918 GO:0071013 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0098542 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

59

Amino Acids

6.62

Weight (kDa)

5.25

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13010
fragaria_vesca	FvH4_3g13400 FvH4_4g24000
malus_domestica	MD05G1242000.v1.1 MD05G1242100.v1.1 MD10G1223900.v1.1 MD16G1117100.v1.1
prunus_persica	Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.1G229100_v2.0.a1 Prupe.4G121400_v2.0.a1 Prupe.4G121400_v2.0.a1 Prupe.4G121400_v2.0.a1
pyrus_communis	pycom05g21860 pycom10g18790 pycom16g10030
rosa_chinensis	RchiOBHm_Chr4g0430661 RchiOBHm_Chr4g0431171 RchiOBHm_Chr4g0431521 RchiOBHm_Chr5g0022111 RchiOBHm_Chr5g0066381
rosa_laevigata	RLG00000006909 RLG00000006958 RLG00000032645
rosa_multiflora	Rmu_sc0006966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00056820 Rroxscaffold_5G00372400
rosa_rugosa	Rorug04G0245000 Rorug04G0245000 Rorug05G0071400
rosa_samantha	Rh4AG301100 Rh4AG307100 Rh4BG308200 Rh4BG315000 Rh4CG325300 Rh4CG330500 Rh4DG305800 Rh5AG159400 Rh5BG158600 Rh5DG158800
rosa_wichuraiana	Rw4G026140 Rw5G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	26, 34
AluI	AGCT	2 cut(s)	26, 34
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	2 cut(s)	62, 125
AvaI	CYCGRG	2 cut(s)	62, 125
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	2 cut(s)	35, 178
Bme1390I	CCNGG	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	62, 125
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BsaJI	CCNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	95
BsiHKCI	CYCGRG	2 cut(s)	62, 125
BsoBI	CYCGRG	2 cut(s)	62, 125
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	79
CviJI	RGCY	2 cut(s)	26, 34
CviKI_1	RGCY	2 cut(s)	26, 34
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	2 cut(s)	62, 125
EcoRII	CCWGG	1 cut(s)	94
FaiI	YATR	1 cut(s)	117
FspBI	CTAG	2 cut(s)	35, 178
HinfI	GANTC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	33, 81, 108
MaeI	CTAG	2 cut(s)	35, 178
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	5, 123, 132
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	3 cut(s)	28, 36, 124
SspMI	CTAG	2 cut(s)	35, 178
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	79
XspI	CTAG	2 cut(s)	35, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.