RLG00000006909

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002001
Physical Location & Seq
Forward (+)
11770328 .. 11770925
598 bp
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UTR
Exon/CDS
Intron
RLM00000006909

Sequence Viewer

Length: 555 bp
ATGACTTGTTGGCCTGACACTGATGTTAGAAAAGCTATCTGCTCTGCATACTTCCACAATTCTGCTAGATTGAAGGGTGTGGGGGAGTATGTTAATTCCAGAACTGGGATACCATGCCATCTACATCCGAGCAGTGCTCTCTATGGTATGGGATGCACTCCAGACTATGTCGTTTATCATGAACTGATTTTGACTACGAAGGAGTACATGCAGTGTGCCACTGCAGTGGAGCCACAGTGGTTGGCGGAGTTGGGGCCCATGTTCTTCTCTGTGAAGGATTCAGATACATCGCTGTTGGAGCATAAGAAGAGACAAAAGGAAGAGAAGACAGCTATGGAAGCAAGAGATGGAGAATCTGAGAAAGGCTCAACCAGAGGCAGAGATAGAAAACAAGCAGAAGGAGAGAGAAAAAAGATCCAAGCAGCGGCAGCAAATGCCTGGTTTGAACAAGCAGTCTTCTACATATTTGAGGCCAAAGAAACTCGGCTTGTAAATGATAGCAATGTTGTTGTCGACCCAAAAATTACCATATTCACATTTTTAACAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009888 GO:0009892 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010051 GO:0010053 GO:0010054 GO:0010154 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031047 GO:0031050 GO:0031053 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033120 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040007 GO:0040029 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0070887 GO:0070918 GO:0071013 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0098542 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

185

Amino Acids

20.85

Weight (kDa)

5.99

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 9 - 86 3.5e-19 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AciI CCGC 2 cut(s) 245, 425
AclWI GGATC 1 cut(s) 409
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 105, 424
AgsI TTSAA 2 cut(s) 73, 446
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 2 cut(s) 35, 332
AluI AGCT 2 cut(s) 35, 332
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 409
AoxI GGCC 3 cut(s) 11, 254, 471
ApaI GGGCCC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 422, 428
AspS9I GGNCC 2 cut(s) 254, 255
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 332, 448
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 434, 440
BccI CCATC 2 cut(s) 126, 341
BciT130I CCWGG 1 cut(s) 439
BciVI GTATCC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 102
BisI GCNGC 3 cut(s) 423, 426, 429
BlsI GCNGC 3 cut(s) 424, 427, 430
Bme1390I CCNGG 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 254, 255
BmiI GGNNCC 3 cut(s) 231, 255, 256
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 332, 448
BplI GAGNNNNNCTC 4 cut(s) 121, 153, 350, 382
BpmI CTGGAG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 424
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 124, 158
BseLI CCNNNNNNNGG 2 cut(s) 105, 424
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 434, 440
BshFI GGCC 3 cut(s) 13, 256, 473
BsiHKAI GWGCWC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 105, 424
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 3 cut(s) 13, 256, 473
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 139, 258
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 2 cut(s) 245, 425
BspANI GGCC 3 cut(s) 13, 256, 473
BspCNI CTCAG 1 cut(s) 349
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 231, 255, 256
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 237
Bst6I CTCTTC 2 cut(s) 302, 315
BstAPI GCANNNNNTGC 1 cut(s) 434
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 124, 158
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 4 cut(s) 298, 338, 428, 434
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 434, 440
BstV2I GAAGAC 2 cut(s) 332, 448
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 414
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 13, 256, 473
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 124, 158
BtsI GCAGTG 4 cut(s) 139, 218, 219, 231
BtsIMutI CAGTG 6 cut(s) 18, 139, 218, 219, 231, 242
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 254, 255
Csp6I GTAC 1 cut(s) 205
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 4 cut(s) 114, 179, 208, 259
CviJI RGCY 8 cut(s) 13, 35, 232, 256, 332, 366, 473, 487
CviKI_1 RGCY 8 cut(s) 13, 35, 232, 256, 332, 366, 473, 487
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 302, 315
EarI CTCTTC 2 cut(s) 302, 315
EciI GGCGGA 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 4 cut(s) 117, 182, 211, 262
FatI CATG 4 cut(s) 113, 178, 207, 258
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 423, 426, 429
FokI GGATG 2 cut(s) 111, 165
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 423, 426, 429
FspBI CTAG 1 cut(s) 66
GluI GCNGC 3 cut(s) 423, 426, 429
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 3 cut(s) 13, 256, 473
Hin1II CATG 4 cut(s) 117, 182, 211, 262
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 2 cut(s) 278, 353
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 129, 283, 358
Hpy188III TCNNGA 3 cut(s) 99, 161, 179
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 67, 193, 268, 392
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 47, 156, 211, 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 338, 428, 434
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 4 cut(s) 117, 182, 211, 262
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 229, 298
LpnPI CCDG 7 cut(s) 27, 90, 112, 174, 385, 424, 451
Lsp1109I GCAGC 2 cut(s) 434, 440
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 66
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 5 cut(s) 256, 319, 332, 337, 448
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 139, 258
MluCI AATT 3 cut(s) 58, 94, 522
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 2 cut(s) 368, 463
MseI TTAA 2 cut(s) 93, 542
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 4 cut(s) 298, 338, 428, 434
NdeII GATC 1 cut(s) 414
NlaIII CATG 4 cut(s) 117, 182, 211, 262
NlaIV GGNNCC 3 cut(s) 231, 255, 256
NmeAIII GCCGAG 1 cut(s) 463
NspI RCATGY 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 224
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 2 cut(s) 278, 353
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 424, 427, 430
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 231, 255, 256
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 254, 255
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 414
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 224
SalI GTCGAC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 93, 542
SatI GCNGC 3 cut(s) 423, 426, 429
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 2 cut(s) 254, 255
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 2 cut(s) 139, 258
SetI ASST 2 cut(s) 37, 334
SfaNI GCATC 1 cut(s) 143
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 3 cut(s) 58, 94, 522
SsiI CCGC 2 cut(s) 245, 425
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 58, 94, 522
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 278, 353
Tru1I TTAA 2 cut(s) 93, 542
Tru9I TTAA 2 cut(s) 93, 542
TscAI CASTG 6 cut(s) 25, 139, 218, 226, 231, 242
TseI GCWGC 2 cut(s) 422, 428
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 6 cut(s) 25, 139, 218, 226, 231, 242
Tth111I GACNNNGTC 1 cut(s) 167
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.