RchiOBHm_Chr4g0431521

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002001
Physical Location & Seq
Reverse (-)
55738519 .. 55739124
606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40017

Sequence Viewer

Length: 252 bp
ATGTACGTTGTTAGAAAAGCTATCTGCTCTGCATACTTCCACAATTCTGCTAGATTGAAGGGTGTGGGGGAGTATGTTAATTCCAGAACTGGGATGCCATGCCATCTACATCCGAGCAGTGCTTTCTATGGTATGGGATGCACTCCAGACTATGTTGTTTATCATGAACTGATTTTGACTACGAAGGAGTACGTGCCACTGCTGTGGAGCCACAGTGGTTGGTGGAGTTGGGGCCCATGTTCTTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009888 GO:0009892 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010051 GO:0010053 GO:0010054 GO:0010154 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031047 GO:0031050 GO:0031053 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033120 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040007 GO:0040029 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0070887 GO:0070918 GO:0071013 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0098542 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

83

Amino Acids

9.43

Weight (kDa)

8.4

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 4 - 65 5.6e-12 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 5, 191
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 202
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 1 cut(s) 232
ApaI GGGCCC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 232, 233
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 236
BccI CCATC 1 cut(s) 111
BfaI CTAG 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 232, 233
BmiI GGNNCC 3 cut(s) 209, 233, 234
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 84, 128
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 99, 109, 143
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 236
BshFI GGCC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 234
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 236
BspANI GGCC 1 cut(s) 234
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 209, 233, 234
BsrI ACTGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 193
BstF5I GGATG 3 cut(s) 99, 109, 143
BstSLI GKGCMC 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 3 cut(s) 99, 109, 143
BtsI GCAGTG 2 cut(s) 124, 197
BtsIMutI CAGTG 3 cut(s) 124, 197, 220
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 232, 233
Csp6I GTAC 2 cut(s) 4, 190
CspCI CAANNNNNGTGG 2 cut(s) 200, 235
CviAII CATG 3 cut(s) 99, 164, 237
CviJI RGCY 3 cut(s) 20, 210, 234
CviKI_1 RGCY 3 cut(s) 20, 210, 234
CviQI GTAC 2 cut(s) 4, 190
Eco24I GRGCYC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 3 cut(s) 102, 167, 240
FaiI YATR 8 cut(s) 34, 75, 100, 129, 134, 153, 165, 238
FatI CATG 3 cut(s) 98, 163, 236
FokI GGATG 3 cut(s) 96, 106, 150
FriOI GRGCYC 1 cut(s) 236
FspBI CTAG 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 234
Hin1II CATG 3 cut(s) 102, 167, 240
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 84, 146, 164
HpyAV CCTTC 2 cut(s) 52, 178
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 6, 192
HpyCH4V TGCA 2 cut(s) 32, 141
HpySE526I ACGT 2 cut(s) 6, 192
Hsp92II CATG 3 cut(s) 102, 167, 240
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 3 cut(s) 75, 97, 159
LweI GCATC 2 cut(s) 84, 128
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 6, 192
MboII GAAGA 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 43, 79
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 202
NlaIII CATG 3 cut(s) 102, 167, 240
NlaIV GGNNCC 3 cut(s) 209, 233, 234
OliI CACNNNNGTG 1 cut(s) 202
PagI TCATGA 1 cut(s) 163
Ppu21I YACGTR 1 cut(s) 193
PspN4I GGNNCC 3 cut(s) 209, 233, 234
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 232, 233
RsaI GTAC 2 cut(s) 5, 191
RsaNI GTAC 2 cut(s) 4, 190
RseI CAYNNNNRTG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 232, 233
SduI GDGCHC 1 cut(s) 236
SetI ASST 3 cut(s) 9, 22, 195
SfaNI GCATC 2 cut(s) 84, 128
SgeI CNNG 8 cut(s) 63, 96, 102, 111, 126, 158, 176, 205
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 2 cut(s) 43, 79
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 9, 195
TasI AATT 2 cut(s) 43, 79
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 3 cut(s) 124, 204, 220
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 3 cut(s) 124, 204, 220
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.