Subtilase family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1265 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| Acc16I | TGCGCA | 1 cut(s) | 1686 |
| Acc36I | ACCTGC | 1 cut(s) | 1808 |
| AccB1I | GGYRCC | 1 cut(s) | 1531 |
| AccBSI | CCGCTC | 2 cut(s) | 100, 1059 |
| AccI | GTMKAC | 1 cut(s) | 104 |
| AciI | CCGC | 6 cut(s) | 92, 100, 281, 1057, 1373, 2300 |
| AclI | AACGTT | 1 cut(s) | 1436 |
| AclWI | GGATC | 6 cut(s) | 911, 924, 1301, 1823, 2302, 2315 |
| AcoI | YGGCCR | 4 cut(s) | 220, 473, 1579, 1734 |
| AcsI | RAATTY | 4 cut(s) | 201, 316, 1424, 2042 |
| AcuI | CTGAAG | 3 cut(s) | 72, 475, 1641 |
| AcyI | GRCGYC | 1 cut(s) | 2279 |
| AfaI | GTAC | 7 cut(s) | 170, 248, 577, 1601, 2006, 2087, 2363 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 270, 407, 414, 998, 999, 2393 |
| AflIII | ACRYGT | 2 cut(s) | 81, 539 |
| AgeI | ACCGGT | 1 cut(s) | 407 |
| AjnI | CCWGG | 3 cut(s) | 631, 1534, 2391 |
| Alw21I | GWGCWC | 2 cut(s) | 1843, 2233 |
| Alw26I | GTCTC | 8 cut(s) | 135, 299, 337, 416, 657, 2064, 2134, 2150 |
| Alw44I | GTGCAC | 1 cut(s) | 2229 |
| AlwI | GGATC | 6 cut(s) | 911, 924, 1301, 1823, 2302, 2315 |
| Ama87I | CYCGRG | 1 cut(s) | 886 |
| AoxI | GGCC | 8 cut(s) | 220, 416, 473, 988, 1238, 1579, 1734, 2395 |
| ApaLI | GTGCAC | 1 cut(s) | 2229 |
| ApoI | RAATTY | 4 cut(s) | 201, 316, 1424, 2042 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1046, 1078 |
| AsiGI | ACCGGT | 1 cut(s) | 407 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1143, 2218, 2345 |
| AspLEI | GCGC | 2 cut(s) | 1687, 1703 |
| AspS9I | GGNCC | 6 cut(s) | 844, 989, 1054, 1487, 2052, 2395 |
| AsuC2I | CCSGG | 5 cut(s) | 324, 1630, 1691, 1851, 1915 |
| AsuHPI | GGTGA | 6 cut(s) | 225, 1790, 1791, 1927, 2124, 2134 |
| AsuII | TTCGAA | 1 cut(s) | 425 |
| AvaI | CYCGRG | 1 cut(s) | 886 |
| AvaII | GGWCC | 4 cut(s) | 844, 1054, 1487, 2052 |
| BaeGI | GKGCMC | 3 cut(s) | 678, 1207, 2233 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 453, 486 |
| BalI | TGGCCA | 2 cut(s) | 222, 475 |
| BamHI | GGATCC | 2 cut(s) | 916, 2307 |
| BanI | GGYRCC | 1 cut(s) | 1531 |
| BanII | GRGCYC | 1 cut(s) | 1564 |
| BbsI | GAAGAC | 2 cut(s) | 78, 444 |
| Bbv12I | GWGCWC | 2 cut(s) | 1843, 2233 |
| BccI | CCATC | 9 cut(s) | 212, 244, 494, 1769, 1940, 1975, 1996, 2022, 2396 |
| BceAI | ACGGC | 3 cut(s) | 1274, 1566, 1749 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 84, 118, 1521, 1555 |
| BciT130I | CCWGG | 3 cut(s) | 633, 1536, 2393 |
| BciVI | GTATCC | 1 cut(s) | 1322 |
| BclI | TGATCA | 1 cut(s) | 1380 |
| BcnI | CCSGG | 5 cut(s) | 324, 1630, 1691, 1851, 1915 |
| BcoDI | GTCTC | 8 cut(s) | 135, 299, 337, 416, 657, 2064, 2134, 2150 |
| BfaI | CTAG | 9 cut(s) | 153, 525, 597, 660, 756, 833, 1344, 1608, 2082 |
| BfmI | CTRYAG | 5 cut(s) | 291, 702, 852, 921, 975 |
| BfuAI | ACCTGC | 1 cut(s) | 1808 |
| BfuI | GTATCC | 1 cut(s) | 1322 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1587 |
| BglII | AGATCT | 1 cut(s) | 1923 |
| BlpI | GCTNAGC | 1 cut(s) | 1404 |
| Bme1390I | CCNGG | 8 cut(s) | 324, 633, 1536, 1630, 1691, 1851, 1915, 2393 |
| Bme18I | GGWCC | 4 cut(s) | 844, 1054, 1487, 2052 |
| BmeT110I | CYCGRG | 1 cut(s) | 886 |
| BmgT120I | GGNCC | 6 cut(s) | 844, 989, 1054, 1487, 2052, 2395 |
| BmiI | GGNNCC | 8 cut(s) | 24, 918, 991, 1288, 1533, 1563, 1572, 2309 |
| BmrFI | CCNGG | 8 cut(s) | 324, 633, 1536, 1630, 1691, 1851, 1915, 2393 |
| BmrI | ACTGGG | 1 cut(s) | 474 |
| BmuI | ACTGGG | 1 cut(s) | 474 |
| BpiI | GAAGAC | 2 cut(s) | 78, 444 |
| BpmI | CTGGAG | 1 cut(s) | 1285 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1404 |
| Bpu14I | TTCGAA | 1 cut(s) | 425 |
| BpuEI | CTTGAG | 2 cut(s) | 654, 1340 |
| BpuMI | CCSGG | 5 cut(s) | 324, 1630, 1691, 1851, 1915 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2144 |
| BsaHI | GRCGYC | 1 cut(s) | 2279 |
| BsaI | GGTCTC | 2 cut(s) | 416, 2134 |
| BsaWI | WCCGGW | 2 cut(s) | 407, 2282 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 270, 407, 414, 998, 999, 2393 |
| Bse118I | RCCGGY | 4 cut(s) | 407, 1459, 1577, 2397 |
| Bse1I | ACTGG | 4 cut(s) | 469, 1108, 1155, 1302 |
| Bse3DI | GCAATG | 2 cut(s) | 1004, 1093 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2144 |
| BseBI | CCWGG | 3 cut(s) | 633, 1536, 2393 |
| BseGI | GGATG | 8 cut(s) | 223, 236, 811, 874, 1017, 1372, 1634, 2388 |
| BseJI | GATNNNNATC | 1 cut(s) | 2144 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 270, 407, 414, 998, 999, 2393 |
| BseMI | GCAATG | 2 cut(s) | 1004, 1093 |
| BseMII | CTCAG | 2 cut(s) | 348, 1185 |
| BseNI | ACTGG | 4 cut(s) | 469, 1108, 1155, 1302 |
| BseSI | GKGCMC | 3 cut(s) | 678, 1207, 2233 |
| BseX3I | CGGCCG | 1 cut(s) | 1579 |
| BseYI | CCCAGC | 1 cut(s) | 992 |
| BsgI | GTGCAG | 2 cut(s) | 1440, 2097 |
| Bsh1285I | CGRYCG | 2 cut(s) | 104, 1582 |
| BshFI | GGCC | 8 cut(s) | 222, 418, 475, 990, 1240, 1581, 1736, 2397 |
| BshNI | GGYRCC | 1 cut(s) | 1531 |
| BshTI | ACCGGT | 1 cut(s) | 407 |
| BsiEI | CGRYCG | 2 cut(s) | 104, 1582 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1843, 2233 |
| BsiHKCI | CYCGRG | 1 cut(s) | 886 |
| BslFI | GGGAC | 5 cut(s) | 694, 1015, 1459, 1645, 2395 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 270, 407, 414, 998, 999, 2393 |
| BsmAI | GTCTC | 8 cut(s) | 135, 299, 337, 416, 657, 2064, 2134, 2150 |
| BsmBI | CGTCTC | 2 cut(s) | 337, 2064 |
| BsmFI | GGGAC | 5 cut(s) | 694, 1015, 1459, 1645, 2395 |
| BsnI | GGCC | 8 cut(s) | 222, 418, 475, 990, 1240, 1581, 1736, 2397 |
| Bso31I | GGTCTC | 2 cut(s) | 416, 2134 |
| BsoBI | CYCGRG | 1 cut(s) | 886 |
| Bsp119I | TTCGAA | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 5 cut(s) | 678, 1207, 1564, 1843, 2233 |
| Bsp1407I | TGTACA | 2 cut(s) | 246, 2004 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1404 |
| Bsp19I | CCATGG | 1 cut(s) | 945 |
| BspACI | CCGC | 6 cut(s) | 92, 100, 281, 1057, 1373, 2300 |
| BspANI | GGCC | 8 cut(s) | 222, 418, 475, 990, 1240, 1581, 1736, 2397 |
| BspCNI | CTCAG | 2 cut(s) | 347, 1184 |
| BspLI | GGNNCC | 8 cut(s) | 24, 918, 991, 1288, 1533, 1563, 1572, 2309 |
| BspMAI | CTGCAG | 3 cut(s) | 295, 706, 979 |
| BspMI | ACCTGC | 1 cut(s) | 1808 |
| BspPI | GGATC | 6 cut(s) | 911, 924, 1301, 1823, 2302, 2315 |
| BspT104I | TTCGAA | 1 cut(s) | 425 |
| BspT107I | GGYRCC | 1 cut(s) | 1531 |
| BspTNI | GGTCTC | 2 cut(s) | 416, 2134 |
| BsrBI | CCGCTC | 2 cut(s) | 100, 1059 |
| BsrDI | GCAATG | 2 cut(s) | 1004, 1093 |
| BsrFI | RCCGGY | 4 cut(s) | 407, 1459, 1577, 2397 |
| BsrGI | TGTACA | 2 cut(s) | 246, 2004 |
| BsrI | ACTGG | 4 cut(s) | 469, 1108, 1155, 1302 |
| BssAI | RCCGGY | 4 cut(s) | 407, 1459, 1577, 2397 |
| BssNI | GRCGYC | 1 cut(s) | 2279 |
| BssT1I | CCWWGG | 5 cut(s) | 945, 997, 1022, 1566, 1743 |
| Bst2UI | CCWGG | 3 cut(s) | 633, 1536, 2393 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 178 |
| BstACI | GRCGYC | 1 cut(s) | 2279 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1463 |
| BstAUI | TGTACA | 2 cut(s) | 246, 2004 |
| BstBI | TTCGAA | 1 cut(s) | 425 |
| BstC8I | GCNNGC | 6 cut(s) | 420, 902, 1045, 1177, 1455, 1579 |
| BstDEI | CTNAG | 6 cut(s) | 334, 644, 1171, 1404, 1927, 2118 |
| BstDSI | CCRYGG | 2 cut(s) | 945, 1731 |
| BstF5I | GGATG | 8 cut(s) | 223, 236, 811, 874, 1017, 1372, 1634, 2388 |
| BstHHI | GCGC | 2 cut(s) | 1687, 1703 |
| BstMAI | GTCTC | 8 cut(s) | 135, 299, 337, 416, 657, 2064, 2134, 2150 |
| BstMCI | CGRYCG | 2 cut(s) | 104, 1582 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 897, 938, 1211, 1463, 1559, 1587, 1814, 2102 |
| BstNI | CCWGG | 3 cut(s) | 633, 1536, 2393 |
| BstNSI | RCATGY | 4 cut(s) | 77, 85, 543, 1179 |
| BstSCI | CCNGG | 8 cut(s) | 322, 631, 1534, 1628, 1689, 1849, 1913, 2391 |
| BstSFI | CTRYAG | 5 cut(s) | 291, 702, 852, 921, 975 |
| BstSLI | GKGCMC | 3 cut(s) | 678, 1207, 2233 |
| BstV2I | GAAGAC | 2 cut(s) | 78, 444 |
| BstX2I | RGATCY | 3 cut(s) | 916, 1923, 2307 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 528, 1744 |
| BstYI | RGATCY | 3 cut(s) | 916, 1923, 2307 |
| BstZI | CGGCCG | 1 cut(s) | 1579 |
| BsuI | GTATCC | 1 cut(s) | 1322 |
| BsuRI | GGCC | 8 cut(s) | 222, 418, 475, 990, 1240, 1581, 1736, 2397 |
| BtgI | CCRYGG | 2 cut(s) | 945, 1731 |
| BtsCI | GGATG | 8 cut(s) | 223, 236, 811, 874, 1017, 1372, 1634, 2388 |
| BtsIMutI | CAGTG | 7 cut(s) | 283, 349, 1056, 1148, 1309, 2187, 2319 |
| BveI | ACCTGC | 1 cut(s) | 1808 |
| Cac8I | GCNNGC | 6 cut(s) | 420, 902, 1045, 1177, 1455, 1579 |
| CfoI | GCGC | 2 cut(s) | 1687, 1703 |
| Cfr10I | RCCGGY | 4 cut(s) | 407, 1459, 1577, 2397 |
| Cfr13I | GGNCC | 6 cut(s) | 844, 989, 1054, 1487, 2052, 2395 |
| CseI | GACGC | 1 cut(s) | 2268 |
| Csp6I | GTAC | 7 cut(s) | 169, 247, 576, 1600, 2005, 2086, 2362 |
| CspAI | ACCGGT | 1 cut(s) | 407 |
| CviQI | GTAC | 7 cut(s) | 169, 247, 576, 1600, 2005, 2086, 2362 |
| DdeI | CTNAG | 6 cut(s) | 334, 644, 1171, 1404, 1927, 2118 |
| DraI | TTTAAA | 1 cut(s) | 583 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| EaeI | YGGCCR | 4 cut(s) | 220, 473, 1579, 1734 |
| EagI | CGGCCG | 1 cut(s) | 1579 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 178 |
| EarI | CTCTTC | 2 cut(s) | 33, 178 |
| EclXI | CGGCCG | 1 cut(s) | 1579 |
| Eco130I | CCWWGG | 5 cut(s) | 945, 997, 1022, 1566, 1743 |
| Eco24I | GRGCYC | 1 cut(s) | 1564 |
| Eco31I | GGTCTC | 2 cut(s) | 416, 2134 |
| Eco32I | GATATC | 1 cut(s) | 1626 |
| Eco47I | GGWCC | 4 cut(s) | 844, 1054, 1487, 2052 |
| Eco52I | CGGCCG | 1 cut(s) | 1579 |
| Eco57I | CTGAAG | 3 cut(s) | 72, 475, 1641 |
| Eco88I | CYCGRG | 1 cut(s) | 886 |
| EcoO109I | RGGNCCY | 2 cut(s) | 989, 1487 |
| EcoRII | CCWGG | 3 cut(s) | 631, 1534, 2391 |
| EcoRV | GATATC | 1 cut(s) | 1626 |
| EcoT14I | CCWWGG | 5 cut(s) | 945, 997, 1022, 1566, 1743 |
| EcoT22I | ATGCAT | 1 cut(s) | 727 |
| EcoT38I | GRGCYC | 1 cut(s) | 1564 |
| ErhI | CCWWGG | 5 cut(s) | 945, 997, 1022, 1566, 1743 |
| Esp3I | CGTCTC | 2 cut(s) | 337, 2064 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1474, 1506, 1910, 1942, 2159, 2191 |
| FaqI | GGGAC | 5 cut(s) | 694, 1015, 1459, 1645, 2395 |
| FauNDI | CATATG | 4 cut(s) | 1223, 1945, 2161, 2367 |
| FbaI | TGATCA | 1 cut(s) | 1380 |
| FblI | GTMKAC | 1 cut(s) | 104 |
| FokI | GGATG | 8 cut(s) | 223, 230, 818, 881, 1004, 1379, 1621, 2375 |
| FriOI | GRGCYC | 1 cut(s) | 1564 |
| FspAI | RTGCGCAY | 1 cut(s) | 1686 |
| FspBI | CTAG | 9 cut(s) | 153, 525, 597, 660, 756, 833, 1344, 1608, 2082 |
| FspI | TGCGCA | 1 cut(s) | 1686 |
| GlaI | GCGC | 2 cut(s) | 1686, 1702 |
| GsaI | CCCAGC | 1 cut(s) | 996 |
| GsuI | CTGGAG | 1 cut(s) | 1285 |
| HaeIII | GGCC | 8 cut(s) | 222, 418, 475, 990, 1240, 1581, 1736, 2397 |
| HgaI | GACGC | 1 cut(s) | 2268 |
| HhaI | GCGC | 2 cut(s) | 1687, 1703 |
| Hin1I | GRCGYC | 1 cut(s) | 2279 |
| Hin6I | GCGC | 2 cut(s) | 1685, 1701 |
| HinP1I | GCGC | 2 cut(s) | 1685, 1701 |
| HincII | GTYRAC | 3 cut(s) | 79, 105, 1095 |
| HindII | GTYRAC | 3 cut(s) | 79, 105, 1095 |
| HindIII | AAGCTT | 1 cut(s) | 2173 |
| HinfI | GANTC | 3 cut(s) | 185, 307, 665 |
| HpaI | GTTAAC | 2 cut(s) | 79, 1095 |
| HphI | GGTGA | 6 cut(s) | 225, 1790, 1791, 1927, 2124, 2134 |
| Hpy166II | GTNNAC | 9 cut(s) | 79, 105, 118, 249, 1054, 1095, 1156, 1600, 2231 |
| Hpy188I | TCNGA | 7 cut(s) | 217, 494, 593, 826, 1824, 2049, 2268 |
| Hpy188III | TCNNGA | 8 cut(s) | 777, 1030, 1310, 1482, 1513, 1769, 2311, 2403 |
| Hpy8I | GTNNAC | 9 cut(s) | 79, 105, 118, 249, 1054, 1095, 1156, 1600, 2231 |
| HpyAV | CCTTC | 7 cut(s) | 43, 251, 411, 946, 980, 1177, 1500 |
| HpyCH4IV | ACGT | 4 cut(s) | 772, 1332, 1436, 2064 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 897, 938, 1211, 1463, 1559, 1587, 1814, 2102 |
| HpyF3I | CTNAG | 6 cut(s) | 334, 644, 1171, 1404, 1927, 2118 |
| HpySE526I | ACGT | 4 cut(s) | 772, 1332, 1436, 2064 |
| Hsp92I | GRCGYC | 1 cut(s) | 2279 |
| HspAI | GCGC | 2 cut(s) | 1685, 1701 |
| KroI | GCCGGC | 1 cut(s) | 1577 |
| KroNI | GCCGGC | 1 cut(s) | 1579 |
| Ksp22I | TGATCA | 1 cut(s) | 1380 |
| KspAI | GTTAAC | 2 cut(s) | 79, 1095 |
| LmnI | GCTCC | 7 cut(s) | 593, 1286, 1567, 1698, 1814, 1904, 2110 |
| MaeI | CTAG | 9 cut(s) | 153, 525, 597, 660, 756, 833, 1344, 1608, 2082 |
| MaeII | ACGT | 4 cut(s) | 772, 1332, 1436, 2064 |
| MaeIII | GTNAC | 8 cut(s) | 344, 637, 737, 1610, 1769, 2056, 2122, 2182 |
| MbiI | CCGCTC | 2 cut(s) | 100, 1059 |
| MboII | GAAGA | 5 cut(s) | 20, 78, 165, 449, 684 |
| MflI | RGATCY | 3 cut(s) | 916, 1923, 2307 |
| MhlI | GDGCHC | 5 cut(s) | 678, 1207, 1564, 1843, 2233 |
| MlsI | TGGCCA | 2 cut(s) | 222, 475 |
| MluNI | TGGCCA | 2 cut(s) | 222, 475 |
| MlyI | GAGTC | 2 cut(s) | 301, 659 |
| MmeI | TCCRAC | 4 cut(s) | 31, 529, 1453, 1986 |
| Mox20I | TGGCCA | 2 cut(s) | 222, 475 |
| Mph1103I | ATGCAT | 1 cut(s) | 727 |
| MroNI | GCCGGC | 1 cut(s) | 1577 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1143, 2218, 2345 |
| MscI | TGGCCA | 2 cut(s) | 222, 475 |
| MseI | TTAA | 6 cut(s) | 78, 582, 1076, 1094, 1856, 1980 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 2 cut(s) | 222, 475 |
| MspA1I | CMGCKG | 2 cut(s) | 92, 701 |
| MspR9I | CCNGG | 8 cut(s) | 324, 633, 1536, 1630, 1691, 1851, 1915, 2393 |
| MvaI | CCWGG | 3 cut(s) | 633, 1536, 2393 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 897, 938, 1211, 1463, 1559, 1587, 1814, 2102 |
| NaeI | GCCGGC | 1 cut(s) | 1579 |
| NciI | CCSGG | 5 cut(s) | 324, 1630, 1691, 1851, 1915 |
| NcoI | CCATGG | 1 cut(s) | 945 |
| NdeI | CATATG | 4 cut(s) | 1223, 1945, 2161, 2367 |
| NgoMIV | GCCGGC | 1 cut(s) | 1577 |
| NlaIV | GGNNCC | 8 cut(s) | 24, 918, 991, 1288, 1533, 1563, 1572, 2309 |
| NmeAIII | GCCGAG | 1 cut(s) | 1062 |
| NmuCI | GTSAC | 6 cut(s) | 344, 637, 1610, 1769, 2122, 2182 |
| NsbI | TGCGCA | 1 cut(s) | 1686 |
| NsiI | ATGCAT | 1 cut(s) | 727 |
| NspI | RCATGY | 4 cut(s) | 77, 85, 543, 1179 |
| NspV | TTCGAA | 1 cut(s) | 425 |
| PaeI | GCATGC | 1 cut(s) | 1179 |
| PciI | ACATGT | 2 cut(s) | 81, 539 |
| PdiI | GCCGGC | 1 cut(s) | 1579 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1143, 2218, 2345 |
| PfeI | GAWTC | 1 cut(s) | 185 |
| PflFI | GACNNNGTC | 1 cut(s) | 1883 |
| PfoI | TCCNGGA | 1 cut(s) | 1628 |
| PinAI | ACCGGT | 1 cut(s) | 407 |
| PleI | GAGTC | 2 cut(s) | 301, 659 |
| PpsI | GAGTC | 2 cut(s) | 301, 659 |
| PpuMI | RGGWCCY | 1 cut(s) | 1487 |
| PscI | ACATGT | 2 cut(s) | 81, 539 |
| PsiI | TTATAA | 1 cut(s) | 1265 |
| Psp1406I | AACGTT | 1 cut(s) | 1436 |
| Psp5II | RGGWCCY | 1 cut(s) | 1487 |
| Psp6I | CCWGG | 3 cut(s) | 631, 1534, 2391 |
| PspFI | CCCAGC | 1 cut(s) | 992 |
| PspGI | CCWGG | 3 cut(s) | 631, 1534, 2391 |
| PspN4I | GGNNCC | 8 cut(s) | 24, 918, 991, 1288, 1533, 1563, 1572, 2309 |
| PspPI | GGNCC | 6 cut(s) | 844, 989, 1054, 1487, 2052, 2395 |
| PspPPI | RGGWCCY | 1 cut(s) | 1487 |
| PstI | CTGCAG | 3 cut(s) | 295, 706, 979 |
| PsuI | RGATCY | 3 cut(s) | 916, 1923, 2307 |
| PsyI | GACNNNGTC | 1 cut(s) | 1883 |
| PvuII | CAGCTG | 1 cut(s) | 701 |
| RsaI | GTAC | 7 cut(s) | 170, 248, 577, 1601, 2006, 2087, 2363 |
| RsaNI | GTAC | 7 cut(s) | 169, 247, 576, 1600, 2005, 2086, 2362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SalI | GTCGAC | 1 cut(s) | 103 |
| SaqAI | TTAA | 6 cut(s) | 78, 582, 1076, 1094, 1856, 1980 |
| Sau96I | GGNCC | 6 cut(s) | 844, 989, 1054, 1487, 2052, 2395 |
| SchI | GAGTC | 2 cut(s) | 301, 659 |
| ScrFI | CCNGG | 8 cut(s) | 324, 633, 1536, 1630, 1691, 1851, 1915, 2393 |
| SduI | GDGCHC | 5 cut(s) | 678, 1207, 1564, 1843, 2233 |
| SfcI | CTRYAG | 5 cut(s) | 291, 702, 852, 921, 975 |
| SfuI | TTCGAA | 1 cut(s) | 425 |
| SinI | GGWCC | 4 cut(s) | 844, 1054, 1487, 2052 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 2 cut(s) | 669, 1319 |
| SmoI | CTYRAG | 2 cut(s) | 669, 1319 |
| SphI | GCATGC | 1 cut(s) | 1179 |
| SsiI | CCGC | 6 cut(s) | 92, 100, 281, 1057, 1373, 2300 |
| SspMI | CTAG | 9 cut(s) | 153, 525, 597, 660, 756, 833, 1344, 1608, 2082 |
| StyD4I | CCNGG | 8 cut(s) | 322, 631, 1534, 1628, 1689, 1849, 1913, 2391 |
| StyI | CCWWGG | 5 cut(s) | 945, 997, 1022, 1566, 1743 |
| TaiI | ACGT | 4 cut(s) | 775, 1335, 1439, 2067 |
| TaqI | TCGA | 3 cut(s) | 104, 425, 878 |
| TatI | WGTACW | 3 cut(s) | 246, 1599, 2004 |
| TauI | GCSGC | 2 cut(s) | 95, 2303 |
| TfiI | GAWTC | 1 cut(s) | 185 |
| Tru1I | TTAA | 6 cut(s) | 78, 582, 1076, 1094, 1856, 1980 |
| Tru9I | TTAA | 6 cut(s) | 78, 582, 1076, 1094, 1856, 1980 |
| TscAI | CASTG | 7 cut(s) | 283, 349, 1056, 1155, 1309, 2187, 2326 |
| TseFI | GTSAC | 6 cut(s) | 344, 637, 1610, 1769, 2122, 2182 |
| Tsp45I | GTSAC | 6 cut(s) | 344, 637, 1610, 1769, 2122, 2182 |
| TspDTI | ATGAA | 4 cut(s) | 25, 257, 665, 2211 |
| TspRI | CASTG | 7 cut(s) | 283, 349, 1056, 1155, 1309, 2187, 2326 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1883 |
| VneI | GTGCAC | 1 cut(s) | 2229 |
| VpaK11BI | GGWCC | 4 cut(s) | 844, 1054, 1487, 2052 |
| XapI | RAATTY | 4 cut(s) | 201, 316, 1424, 2042 |
| XceI | RCATGY | 4 cut(s) | 77, 85, 543, 1179 |
| XmiI | GTMKAC | 1 cut(s) | 104 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1143, 2218, 2345 |
| XspI | CTAG | 9 cut(s) | 153, 525, 597, 660, 756, 833, 1344, 1608, 2082 |
| Zsp2I | ATGCAT | 1 cut(s) | 727 |