Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Reverse (-)

47508958 .. 47511157

Gene Structure 2200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGGGATCAATTCTGGTGTTCCTTTTCCTTGCATTTTCTATGCTCTTCAGCTTTTTCTGTTGGTTCTCCATGTTAACACTTCTTTGGCAGAGAGATCCACTTATATTGTCCACATGGACAAGTCTCTCATGCCCAAGTTCTTCACTAGCCATCAACATTGGTATACCTCCGTTGTTGATTCCTTCAAAACTGAAATTCAAACCTCATCAGATAGCCACAGCTTCTCACCATTCCTTTTATACACCTATGACAATGCATTCCATGGTTTTTCTGCAGTTCTGTCTGTAGATGAACTCGAGACCCTCCAAAAGTCCCCGGGTTTTGTTTTAGCTTATAATGACAAAACTGTTACACTTGACACCACCCATACCAGTGAATTCCTCTCCCTCAGCCCTTCTACTGGCCTTTTGCCAGCCTCGAATTATGGAGAAGACATCATCATTGGTCTCATTGATTCCGGTGTCTGGCCAGAGAGTGAGAGCTTCAAAGATGATGGTCTAACCAAAGACATTCCATCTAGGTGGAAGGGAACATGTGAGGTTGGACAAGAGTTCAATGCCTCTTTGTGTAACAAAAAGTTGATTGGAGCTAGATACTTTAACAAGGGAGTGCTCGCTGCAAACCCCGGCGTCACAATTAGCATGAACTCTGCTAGAGACACTGAAGGCCATGGGACACATACATCTTCCACTGCTGCAGGGAACTTTGTGAATGGGGCATCTTATTTTGGTTACGCTAAAGGAACAGCCAGAGGTGTAGCACCACGCTCAAGGGTTGCAATGTACAAAGTCCTTTGGGATGTAGGTAACGGGAGTTACGCGTCTGATGTTCTAGCTGGTATAGACCAAGCCATTGCTGATGGTGTGGATGTAATTTCCATTTCTATGGGGTTTGATGAAACGCCACTCTATGAAGATCCTATAGCAATAGCTAGCATCTTTTGCAGCCATGGAGAAGAAGCTGGCACAATAGACCGCTCCTTTGGCGGAACATTAACTCTTGATAATGGTGCAACCATTACTGGGTTTACCTTGTTACCAGCAAATGCCATAGTAGAAAAGGTTCCACTGGTATACAACAAGACCTTCTCAGCTTGCAACTCGACAAAGGTATTATCAAATGCTCCAGAGGGAGTCATCATCATATGTGACGAGAGTCATGCTATTCGGGGTCAGATATCTAAGTTCATTGGATCACATGTGCTTGGGGCTGTCTTTATTGGCAAATATCCTGAAATATTTGAGTTGGGAGGTGTGACATTTCCTCTCGTAGTGGTAAGTCCAGAAGATGCACTGGGTTTAATCAAGTATGTTACAACTAGTGTTAAACCTTCTGTGAGCATGAAATTCCAACAAACATTTGTTGGCACAAAGCCTGCACCGGTTGCTTCATTTTACACTTCAAGAGGTCCTTCATCAAGTTATCCAGGTATCTTAAAGCCGGACATAATGGCACCGGGGTCATTAGTTTTGGCTGCATGGCCTCCGAATGTTGCAGCAGGCCAAATTGGATCAAATGTGATGTTATCAAGTGACTACAATTTGATATCTGGCACATCCATGGCTTGTCCTCATGCTTCAGGCGTAGCGGCTTTATTGAAAGGTGCACACCCGGAATGGAGTGCAGCCGCCATTAGGTCTGCTTTGGTCACCACAGCCAACCCCTTAGACAATACTCAGAATCCGATTCGTGACAATGGTGACAATTTCAACTTTGCTTCACCTCTAGCTATGGGAGCAGGCCAGATTGATCCTAATAGAGCACTTGAACCCGGTTTGATATATGATGCAACCCCACAAGATTATGTCAATCTCTTGTGCTCCACAAATTTTACTCGTAAGCAAATCTTAGCCATCACTAGATCACGTACCTATGATTGTTCCAACCCATCTTCTGATCTGAACTATCCCTCCTTCATTTCTTTGTATGATCGTCATCATCACACAAGGAAACTAAGGGTCCAAAATTTTCAGAGGATAGTAACAAATGTGGGAGATGGTGCAGCTAAGTACAAGGCTTCAGTGACAGCTCCAAAGGGTTCTACAGTAACAGTGTCACCGGAGACATTGTTCTTTTCAGAGACATATGAGAATGTCACGCCCCGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

703

Amino Acids

75.52

Weight (kDa)

5.79

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 119	2.3e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	143 - 559	3.9e-37	Subtilase family
fn3_6	PF17766	633 - 699	7.3e-14	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	1453
AccBSI	CCGCTC	1 cut(s)	978
AccI	GTMKAC	2 cut(s)	164, 1074
AccII	CGCG	1 cut(s)	821
AciI	CCGC	4 cut(s)	976, 987, 1589, 1629
AclWI	GGATC	6 cut(s)	14, 90, 911, 1201, 1519, 1745
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	6 cut(s)	195, 377, 1346, 1828, 1966, 2106
AcuI	CTGAAG	4 cut(s)	32, 684, 1563, 2004
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	3 cut(s)	785, 1870, 2012
AfiI	CCNNNNNNNGG	4 cut(s)	401, 465, 1023, 1635
AflIII	ACRYGT	3 cut(s)	533, 819, 1198
AgeI	ACCGGT	1 cut(s)	1381
AgsI	TTSAA	8 cut(s)	187, 200, 487, 556, 1404, 1600, 1711, 1769
AhlI	ACTAGT	1 cut(s)	1319
AjnI	CCWGG	1 cut(s)	1426
AloI	GAACNNNNNNTCC	4 cut(s)	1895, 1927, 2054, 2086
Alw21I	GWGCWC	4 cut(s)	615, 1609, 1765, 1823
Alw26I	GTCTC	6 cut(s)	129, 293, 452, 651, 2057, 2075
Alw44I	GTGCAC	1 cut(s)	1605
AlwI	GGATC	6 cut(s)	14, 90, 911, 1201, 1519, 1745
Ama87I	CYCGRG	2 cut(s)	296, 316
AoxI	GGCC	6 cut(s)	403, 467, 667, 1481, 1501, 1741
ApaLI	GTGCAC	1 cut(s)	1605
ApeKI	GCWGC	7 cut(s)	617, 695, 945, 1475, 1496, 1625, 2003
ApoI	RAATTY	6 cut(s)	195, 377, 1346, 1828, 1966, 2106
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
AsiGI	ACCGGT	1 cut(s)	1381
Asp700I	GAANNNNTTC	1 cut(s)	1062
AspS9I	GGNCC	2 cut(s)	1409, 1960
AsuC2I	CCSGG	6 cut(s)	317, 318, 627, 1458, 1613, 1773
AsuHPI	GGTGA	5 cut(s)	219, 1642, 1712, 1713, 2049
AsuNHI	GCTAGC	1 cut(s)	932
AvaI	CYCGRG	2 cut(s)	296, 316
AvaII	GGWCC	2 cut(s)	1409, 1960
BaeGI	GKGCMC	1 cut(s)	1609
BalI	TGGCCA	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	1453
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	4 cut(s)	615, 1609, 1765, 1823
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	7 cut(s)	604, 682, 957, 1462, 1508, 1637, 2015
BccI	CCATC	7 cut(s)	159, 488, 523, 854, 1862, 1897, 1991
BcgI	CGANNNNNNTGC	2 cut(s)	1142, 1176
BciT130I	CCWGG	1 cut(s)	1428
BcnI	CCSGG	6 cut(s)	317, 318, 627, 1458, 1613, 1773
BcoDI	GTCTC	6 cut(s)	129, 293, 452, 651, 2057, 2075
BcuI	ACTAGT	1 cut(s)	1319
BfaI	CTAG	9 cut(s)	147, 519, 591, 654, 833, 933, 1320, 1727, 1860
BfmI	CTRYAG	5 cut(s)	273, 285, 696, 921, 2043
BisI	GCNGC	9 cut(s)	618, 696, 946, 1476, 1497, 1590, 1626, 1629, 2004
BlsI	GCNGC	9 cut(s)	619, 697, 947, 1477, 1498, 1591, 1627, 1630, 2005
Bme1390I	CCNGG	7 cut(s)	317, 318, 627, 1428, 1458, 1613, 1773
Bme18I	GGWCC	2 cut(s)	1409, 1960
BmeT110I	CYCGRG	2 cut(s)	296, 316
BmgT120I	GGNCC	2 cut(s)	1409, 1960
BmiI	GGNNCC	3 cut(s)	1065, 1455, 1961
BmrFI	CCNGG	7 cut(s)	317, 318, 627, 1428, 1458, 1613, 1773
BmrI	ACTGGG	2 cut(s)	1032, 1304
BmsI	GCATC	4 cut(s)	728, 945, 1279, 1777
BmtI	GCTAGC	1 cut(s)	936
BmuI	ACTGGG	2 cut(s)	1032, 1304
BoxI	GACNNNNGTC	1 cut(s)	1155
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	1110
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	754
BpuMI	CCSGG	6 cut(s)	317, 318, 627, 1458, 1613, 1773
BsaAI	YACGTR	1 cut(s)	1868
BsaBI	GATNNNNATC	1 cut(s)	1935
BsaHI	GRCGYC	1 cut(s)	630
BsaI	GGTCTC	2 cut(s)	293, 452
BsaJI	CCNNGG	8 cut(s)	262, 315, 316, 625, 670, 949, 1457, 1560
BsaWI	WCCGGW	3 cut(s)	458, 1381, 2059
BsaXI	ACNNNNNCTCC	4 cut(s)	1895, 1925, 2054, 2084
Bsc4I	CCNNNNNNNGG	4 cut(s)	401, 465, 1023, 1635
Bse118I	RCCGGY	1 cut(s)	1381
Bse1I	ACTGG	5 cut(s)	372, 406, 1027, 1074, 1299
Bse3DI	GCAATG	2 cut(s)	786, 852
Bse8I	GATNNNNATC	1 cut(s)	1935
BseBI	CCWGG	1 cut(s)	1428
BseDI	CCNNGG	8 cut(s)	262, 315, 316, 625, 670, 949, 1457, 1560
BseGI	GGATG	3 cut(s)	805, 874, 1556
BseJI	GATNNNNATC	1 cut(s)	1935
BseLI	CCNNNNNNNGG	4 cut(s)	401, 465, 1023, 1635
BseMI	GCAATG	2 cut(s)	786, 852
BseMII	CTCAG	3 cut(s)	403, 1104, 1691
BseNI	ACTGG	5 cut(s)	372, 406, 1027, 1074, 1299
BseSI	GKGCMC	1 cut(s)	1609
BseXI	GCAGC	7 cut(s)	604, 682, 957, 1462, 1508, 1637, 2015
BsgI	GTGCAG	3 cut(s)	1362, 1644, 2022
Bsh1236I	CGCG	1 cut(s)	821
BshFI	GGCC	6 cut(s)	405, 469, 669, 1483, 1503, 1743
BshNI	GGYRCC	1 cut(s)	1453
BshTI	ACCGGT	1 cut(s)	1381
BsiHKAI	GWGCWC	4 cut(s)	615, 1609, 1765, 1823
BsiHKCI	CYCGRG	2 cut(s)	296, 316
BsiSI	CCGG	9 cut(s)	317, 459, 627, 1382, 1442, 1457, 1613, 1773, 2060
BslFI	GGGAC	2 cut(s)	298, 688
BslI	CCNNNNNNNGG	4 cut(s)	401, 465, 1023, 1635
BsmAI	GTCTC	6 cut(s)	129, 293, 452, 651, 2057, 2075
BsmFI	GGGAC	2 cut(s)	298, 688
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	6 cut(s)	405, 469, 669, 1483, 1503, 1743
Bso31I	GGTCTC	2 cut(s)	293, 452
BsoBI	CYCGRG	2 cut(s)	296, 316
Bsp1286I	GDGCHC	4 cut(s)	615, 1609, 1765, 1823
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
Bsp19I	CCATGG	4 cut(s)	262, 670, 949, 1560
BspACI	CCGC	4 cut(s)	976, 987, 1589, 1629
BspANI	GGCC	6 cut(s)	405, 469, 669, 1483, 1503, 1743
BspCNI	CTCAG	3 cut(s)	402, 1103, 1690
BspFNI	CGCG	1 cut(s)	821
BspLI	GGNNCC	3 cut(s)	1065, 1455, 1961
BspMAI	CTGCAG	2 cut(s)	277, 700
BspOI	GCTAGC	1 cut(s)	936
BspPI	GGATC	6 cut(s)	14, 90, 911, 1201, 1519, 1745
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	1453
BspTNI	GGTCTC	2 cut(s)	293, 452
BsrBI	CCGCTC	1 cut(s)	978
BsrDI	GCAATG	2 cut(s)	786, 852
BsrFI	RCCGGY	1 cut(s)	1381
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	5 cut(s)	372, 406, 1027, 1074, 1299
BssAI	RCCGGY	1 cut(s)	1381
BssECI	CCNNGG	8 cut(s)	262, 315, 316, 625, 670, 949, 1457, 1560
BssMI	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
BssNAI	GTATAC	2 cut(s)	165, 1075
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	4 cut(s)	262, 670, 949, 1560
Bst1107I	GTATAC	2 cut(s)	165, 1075
Bst2UI	CCWGG	1 cut(s)	1428
Bst4CI	ACNGT	3 cut(s)	349, 2047, 2053
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	2 cut(s)	942, 1385
BstAUI	TGTACA	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	1868
BstC8I	GCNNGC	8 cut(s)	414, 615, 934, 964, 1096, 1377, 1501, 1741
BstDEI	CTNAG	8 cut(s)	389, 1090, 1182, 1666, 1677, 1849, 1955, 2007
BstDSI	CCRYGG	4 cut(s)	262, 670, 949, 1560
BstEII	GGTNACC	1 cut(s)	1648
BstF5I	GGATG	3 cut(s)	805, 874, 1556
BstFNI	CGCG	1 cut(s)	821
BstKTI	GATC	9 cut(s)	9, 98, 919, 1196, 1514, 1753, 1865, 1900, 1933
BstMAI	GTCTC	6 cut(s)	129, 293, 452, 651, 2057, 2075
BstMBI	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
BstMWI	GCNNNNNNNGC	4 cut(s)	942, 984, 1385, 1736
BstNI	CCWGG	1 cut(s)	1428
BstNSI	RCATGY	2 cut(s)	537, 1202
BstPAI	GACNNNNGTC	1 cut(s)	1155
BstPI	GGTNACC	1 cut(s)	1648
BstSCI	CCNGG	7 cut(s)	315, 316, 625, 1426, 1456, 1611, 1771
BstSFI	CTRYAG	5 cut(s)	273, 285, 696, 921, 2043
BstSLI	GKGCMC	1 cut(s)	1609
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	7 cut(s)	604, 682, 957, 1462, 1508, 1637, 2015
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	95, 916
BstXI	CCANNNNNNTGG	2 cut(s)	522, 886
BstYI	RGATCY	2 cut(s)	95, 916
BstZ17I	GTATAC	2 cut(s)	165, 1075
BsuRI	GGCC	6 cut(s)	405, 469, 669, 1483, 1503, 1743
BtgI	CCRYGG	4 cut(s)	262, 670, 949, 1560
BtsCI	GGATG	3 cut(s)	805, 874, 1556
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	7 cut(s)	379, 660, 690, 1067, 1292, 2028, 2058
Cac8I	GCNNGC	8 cut(s)	414, 615, 934, 964, 1096, 1377, 1501, 1741
Cfr10I	RCCGGY	1 cut(s)	1381
Cfr13I	GGNCC	2 cut(s)	1409, 1960
Cfr9I	CCCGGG	1 cut(s)	316
CseI	GACGC	2 cut(s)	619, 810
Csp6I	GTAC	3 cut(s)	784, 1869, 2011
CspAI	ACCGGT	1 cut(s)	1381
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviQI	GTAC	3 cut(s)	784, 1869, 2011
DdeI	CTNAG	8 cut(s)	389, 1090, 1182, 1666, 1677, 1849, 1955, 2007
DpnI	GATC	9 cut(s)	8, 97, 918, 1195, 1513, 1752, 1864, 1899, 1932
DpnII	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	1002
Eco130I	CCWWGG	4 cut(s)	262, 670, 949, 1560
Eco31I	GGTCTC	2 cut(s)	293, 452
Eco32I	GATATC	2 cut(s)	1179, 1548
Eco47I	GGWCC	2 cut(s)	1409, 1960
Eco57I	CTGAAG	4 cut(s)	32, 684, 1563, 2004
Eco88I	CYCGRG	2 cut(s)	296, 316
Eco91I	GGTNACC	1 cut(s)	1648
EcoO109I	RGGNCCY	1 cut(s)	1409
EcoO65I	GGTNACC	1 cut(s)	1648
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	1426
EcoRV	GATATC	2 cut(s)	1179, 1548
EcoT14I	CCWWGG	4 cut(s)	262, 670, 949, 1560
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	4 cut(s)	262, 670, 949, 1560
FalI	AAGNNNNNCTT	4 cut(s)	1396, 1428, 1832, 1864
FaqI	GGGAC	2 cut(s)	298, 688
FauNDI	CATATG	2 cut(s)	1145, 2086
FblI	GTMKAC	2 cut(s)	164, 1074
Fnu4HI	GCNGC	9 cut(s)	618, 696, 946, 1476, 1497, 1590, 1626, 1629, 2004
FokI	GGATG	3 cut(s)	812, 881, 1543
Fsp4HI	GCNGC	9 cut(s)	618, 696, 946, 1476, 1497, 1590, 1626, 1629, 2004
FspBI	CTAG	9 cut(s)	147, 519, 591, 654, 833, 933, 1320, 1727, 1860
GluI	GCNGC	9 cut(s)	618, 696, 946, 1476, 1497, 1590, 1626, 1629, 2004
GsuI	CTGGAG	1 cut(s)	1110
HaeIII	GGCC	6 cut(s)	405, 469, 669, 1483, 1503, 1743
HapII	CCGG	9 cut(s)	317, 459, 627, 1382, 1442, 1457, 1613, 1773, 2060
HgaI	GACGC	2 cut(s)	619, 810
Hin1I	GRCGYC	1 cut(s)	630
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	6 cut(s)	179, 455, 1134, 1156, 1681, 1687
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	9 cut(s)	317, 459, 627, 1382, 1442, 1457, 1613, 1773, 2060
HphI	GGTGA	5 cut(s)	219, 1642, 1712, 1713, 2049
Hpy166II	GTNNAC	6 cut(s)	76, 112, 165, 1029, 1075, 1607
Hpy188III	TCNNGA	7 cut(s)	298, 1001, 1127, 1232, 1283, 1404, 1691
Hpy8I	GTNNAC	6 cut(s)	76, 112, 165, 1029, 1075, 1607
HpyAV	CCTTC	8 cut(s)	193, 405, 520, 659, 1096, 1341, 1422, 1924
HpyCH4III	ACNGT	3 cut(s)	349, 2047, 2053
HpyCH4IV	ACGT	1 cut(s)	1867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	942, 984, 1385, 1736
HpyF3I	CTNAG	8 cut(s)	389, 1090, 1182, 1666, 1677, 1849, 1955, 2007
HpySE526I	ACGT	1 cut(s)	1867
Hsp92I	GRCGYC	1 cut(s)	630
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	6 cut(s)	587, 983, 1129, 1736, 1826, 2035
Lsp1109I	GCAGC	7 cut(s)	604, 682, 957, 1462, 1508, 1637, 2015
LweI	GCATC	4 cut(s)	728, 945, 1279, 1777
MaeI	CTAG	9 cut(s)	147, 519, 591, 654, 833, 933, 1320, 1727, 1860
MaeII	ACGT	1 cut(s)	1867
MalI	GATC	9 cut(s)	8, 97, 918, 1195, 1513, 1752, 1864, 1899, 1932
MbiI	CCGCTC	1 cut(s)	978
MboI	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
MboII	GAAGA	8 cut(s)	38, 133, 443, 678, 926, 968, 1298, 1884
MflI	RGATCY	2 cut(s)	95, 916
MhlI	GDGCHC	4 cut(s)	615, 1609, 1765, 1823
MlsI	TGGCCA	1 cut(s)	469
MluI	ACGCGT	1 cut(s)	819
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	1143, 1165
MmeI	TCCRAC	3 cut(s)	523, 1375, 1908
Mox20I	TGGCCA	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	1062
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	6 cut(s)	75, 600, 995, 1301, 1326, 1436
MslI	CAYNNNNRTG	4 cut(s)	372, 520, 884, 1559
Msp20I	TGGCCA	1 cut(s)	469
MspI	CCGG	9 cut(s)	317, 459, 627, 1382, 1442, 1457, 1613, 1773, 2060
MspR9I	CCNGG	7 cut(s)	317, 318, 627, 1428, 1458, 1613, 1773
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	1428
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	4 cut(s)	942, 984, 1385, 1736
NciI	CCSGG	6 cut(s)	317, 318, 627, 1458, 1613, 1773
NcoI	CCATGG	4 cut(s)	262, 670, 949, 1560
NdeI	CATATG	2 cut(s)	1145, 2086
NdeII	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
NheI	GCTAGC	1 cut(s)	932
NlaIV	GGNNCC	3 cut(s)	1065, 1455, 1961
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	537, 1202
PaeR7I	CTCGAG	1 cut(s)	296
PciI	ACATGT	2 cut(s)	533, 1198
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	1062
PfeI	GAWTC	4 cut(s)	179, 455, 1681, 1687
PinAI	ACCGGT	1 cut(s)	1381
PkrI	GCNGC	9 cut(s)	619, 697, 947, 1477, 1498, 1591, 1627, 1630, 2005
PleI	GAGTC	2 cut(s)	1142, 1164
PpsI	GAGTC	2 cut(s)	1142, 1164
Ppu21I	YACGTR	1 cut(s)	1868
PpuMI	RGGWCCY	1 cut(s)	1409
PscI	ACATGT	2 cut(s)	533, 1198
PshAI	GACNNNNGTC	1 cut(s)	1155
PsiI	TTATAA	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	1409
Psp6I	CCWGG	1 cut(s)	1426
PspEI	GGTNACC	1 cut(s)	1648
PspGI	CCWGG	1 cut(s)	1426
PspN4I	GGNNCC	3 cut(s)	1065, 1455, 1961
PspPI	GGNCC	2 cut(s)	1409, 1960
PspPPI	RGGWCCY	1 cut(s)	1409
PsrI	GAACNNNNNNTAC	2 cut(s)	1047, 1079
PstI	CTGCAG	2 cut(s)	277, 700
PsuI	RGATCY	2 cut(s)	95, 916
RsaI	GTAC	3 cut(s)	785, 1870, 2012
RsaNI	GTAC	3 cut(s)	784, 1869, 2011
RseI	CAYNNNNRTG	4 cut(s)	372, 520, 884, 1559
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	6 cut(s)	75, 600, 995, 1301, 1326, 1436
SatI	GCNGC	9 cut(s)	618, 696, 946, 1476, 1497, 1590, 1626, 1629, 2004
Sau3AI	GATC	9 cut(s)	6, 95, 916, 1193, 1511, 1750, 1862, 1897, 1930
Sau96I	GGNCC	2 cut(s)	1409, 1960
SchI	GAGTC	2 cut(s)	1143, 1165
ScrFI	CCNGG	7 cut(s)	317, 318, 627, 1428, 1458, 1613, 1773
SduI	GDGCHC	4 cut(s)	615, 1609, 1765, 1823
SfaNI	GCATC	4 cut(s)	728, 945, 1279, 1777
SfcI	CTRYAG	5 cut(s)	273, 285, 696, 921, 2043
Sfr274I	CTCGAG	1 cut(s)	296
SinI	GGWCC	2 cut(s)	1409, 1960
SlaI	CTCGAG	1 cut(s)	296
SmaI	CCCGGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	4 cut(s)	372, 520, 884, 1559
SmlI	CTYRAG	2 cut(s)	296, 769
SmoI	CTYRAG	2 cut(s)	296, 769
SpeI	ACTAGT	1 cut(s)	1319
SsiI	CCGC	4 cut(s)	976, 987, 1589, 1629
SspI	AATATT	1 cut(s)	1239
SspMI	CTAG	9 cut(s)	147, 519, 591, 654, 833, 933, 1320, 1727, 1860
StyD4I	CCNGG	7 cut(s)	315, 316, 625, 1426, 1456, 1611, 1771
StyI	CCWWGG	4 cut(s)	262, 670, 949, 1560
TaaI	ACNGT	3 cut(s)	349, 2047, 2053
TaiI	ACGT	1 cut(s)	1870
TaqI	TCGA	3 cut(s)	297, 419, 1103
TatI	WGTACW	2 cut(s)	783, 2010
TauI	GCSGC	2 cut(s)	1592, 1631
TfiI	GAWTC	4 cut(s)	179, 455, 1681, 1687
Tru1I	TTAA	6 cut(s)	75, 600, 995, 1301, 1326, 1436
Tru9I	TTAA	6 cut(s)	75, 600, 995, 1301, 1326, 1436
TscAI	CASTG	7 cut(s)	379, 667, 697, 1074, 1299, 2028, 2058
TseI	GCWGC	7 cut(s)	617, 695, 945, 1475, 1496, 1625, 2003
TspDTI	ATGAA	9 cut(s)	306, 659, 912, 927, 1177, 1358, 1380, 1404, 1906
TspGWI	ACGGA	1 cut(s)	160
TspMI	CCCGGG	1 cut(s)	316
TspRI	CASTG	7 cut(s)	379, 667, 697, 1074, 1299, 2028, 2058
VneI	GTGCAC	1 cut(s)	1605
VpaK11BI	GGWCC	2 cut(s)	1409, 1960
XapI	RAATTY	6 cut(s)	195, 377, 1346, 1828, 1966, 2106
XceI	RCATGY	2 cut(s)	537, 1202
XhoI	CTCGAG	1 cut(s)	296
XmaI	CCCGGG	1 cut(s)	316
XmiI	GTMKAC	2 cut(s)	164, 1074
XmnI	GAANNNNTTC	1 cut(s)	1062
XspI	CTAG	9 cut(s)	147, 519, 591, 654, 833, 933, 1320, 1727, 1860
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.