Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Forward (+)

3383120 .. 3385414

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGCTACTCATAACCATCATGTTCCCTTGTACTTGTGGCTTTCCATTGTCACAATCTCAAACCTTGCCATAGTCTCCACCTTGGCTCATGAATCCAACAATTATATCATCCACATGGATTCATCATTTATGCCCAAAGCCTTTGCTGATCACCATTCTTGGTACTTGTCTACTGTAGATTCTGTACTATCCACTTCTTCTATCTCTTCTAAGCTCATTTATAGCTACACTCATGTCTTAAACGGGTTCAGTGCAAGTCTCTCTGTTCCTGAGCTGGAGGCCTTAAAAACCTCTCCAGGGTACATATCTTCAGTTAGAGACCTGCCGGTAAAATGCGACACGACCCACTCGTCCCAGTTTCTTGGCCTTGACTCCAAGACGGGAGCATGGCCGGTGTCCAATTACGGCAAAGGTACCATTATTGGTTTGGTGGACACCGGGGTTTGGCCAGAAAACGAAAGCTTTAACGACGCTGGAATGTCAGAAATCCCACCAAGATGGAAAGGAGAATGTGAAAGTGGTACACAATTCAGCTCTTCATTGTGCAACAAAAAGCTCATTGGGGCAAGGTTCTTTAACAAAGGAATCGTAGCCCGACAAACCAATGTGACATTCGCCATGAACTCCACAAGGGACACCGACGGTCATGGGACGCACACCTCTTCTACGGCCGCTGGAAACTACGTGGCCGGGGCGTCGTACTTTAATTATGCTCCGGGAACTGCCAGCGGCATGGCGCCTCGGGCTCACGTGGCCATGTACAAGGCTCTGTGGGACGAGGGTGCCTTATCGTCTGACATAATTGCTGCCATCGAGCAAGCAGTTGTGGACGGTGTGGATGTCTTATCCCTGTCGTTCGGATTAGATGGCGTTGCGCTGTACGAGGACCCTGTTGCCATAGCCACATTCTCAGCCATGGAGAAGGGCGTCTTCGTTTCCACATCGGCAGGAAATGAAGGACCTGTGTATGGTAGATTGCATAATGGAATCCCTTGGGTTCTAACAGTTGCAGCTAGTACCATTGATCGTGACTTTCAAGGAACTGCACATCTTGGAAATGGAGAATCCGTTACAGGGATGACTCTTTTTCCGGGGATTAATTCGTCTTCAACTCCAATCCCAATTGTTTTCATGAATGCATGTGACAATTTGAAGAAGCTGCACGAGGTTGGGAAGAAAATCGTGTTGTGCCAGGACAACAATTCACTTGAGGATCAATATGTTACTGTTCAGGATGCAAATGTTGCCGGAGGTATCTTCATTACCAACAACACCGACTTGGAATTCTTCCTCCAGAGCCAATTTCCCACACTTTTTTTGAGTCCAAGGGAAGGTGAAACTATCAAAGACTACATCAAGAGCAACTCTAACCCGAAAGTAAGCTTGGAGTTCCAAAAGACACTTCTTGGTGTGAGACCAGCACCGACGGTTACTAGTTACACATCTAGAGGTCCATCTTCCAGCTTCCCCTTTACTCTCAAGCCGGACATTACTGCACCGGGTTCACTAATCCTCGCTGCATGGCCTCGAAACATTTCGGTGGCAACGGTTAACAAAAACTTCCTGTTTAGTGAATTCAATTTGTTGTCGGGGACATCCATGGCGTGCCCACATGCAGCTGGGTTAGCTGCGCTTGTGAAAGGTGCACATCCTGAATGGAGTCCTGCAGCTATCAGGTCAGCTATGATGACTACGTCGGACATCCTGGATAACACACTTAGTTCCATTAAGGACATTGGTCATCATTTGCTACCGGCTAGTCCTCTGGCCATGGGAGCGGGTCATGTCAATCCCAACAAGGCCGTTAACCCGGGACTCATATATGACGCGACCATAGATGATTACGTAAATCTTCTTTGTGCACTAAACTACACCAAGGAACAAATCCAAACCATCACCAGATCAGCCTCGAACAATTGTTCATCTCCGTCATTAGATCTTAATTACCCTTCGTTCATTGCATTTTTCAATGTCAATGATTCAAAGTCGGGAGTAGAAACCACTCAAGAGTTCCGAAGGACGGTGACCAATGTAGGAAAGGGGCAGTCGACATACGTTGCAAGCGTGACAGCCGTGAAAGGGTTTGAGGTTGGAGTCGTTCCCAACAAATTGGTTTTCAAAAGGGAAGGTGAGAAGCTGAGCTTTACGTTGAGTATAAGAGGTCGACGACTGATGAAAGAGACGGTGGCTTTTGGTTACCTGACTTGGGTGGACACTGAAGGTCAACATGTGGTGAGAAGCCCCATTGTGGCCACAAGACTCAGCTCGGATGTAGTTGTGTCAAATAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

765

Amino Acids

82.24

Weight (kDa)

6.12

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 111	8.2e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	136 - 567	8.9e-44	Subtilase family
fn3_6	PF17766	646 - 750	1.7e-28	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	330
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	3 cut(s)	413, 736, 782
AccBSI	CCGCTC	1 cut(s)	1778
AccI	GTMKAC	3 cut(s)	170, 2048, 2164
AccII	CGCG	1 cut(s)	1829
AciI	CCGC	3 cut(s)	672, 729, 1778
AclWI	GGATC	1 cut(s)	1221
AcoI	YGGCCR	7 cut(s)	389, 446, 669, 687, 753, 1767, 2250
AcsI	RAATTY	2 cut(s)	1283, 1574
AcuI	CTGAAG	2 cut(s)	294, 2238
AcvI	CACGTG	1 cut(s)	751
AcyI	GRCGYC	3 cut(s)	695, 737, 927
AfiI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 2020, 2079, 2206, 2248
AflIII	ACRYGT	1 cut(s)	2227
AgsI	TTSAA	7 cut(s)	1037, 1110, 1153, 1579, 1969, 1983, 2119
AhlI	ACTAGT	1 cut(s)	1433
AjnI	CCWGG	3 cut(s)	295, 1191, 1704
AjuI	GAANNNNNNNTTGG	6 cut(s)	596, 628, 1367, 1386, 1399, 1418
Alw21I	GWGCWC	2 cut(s)	1648, 1864
Alw26I	GTCTC	5 cut(s)	79, 263, 312, 1408, 2174
Alw44I	GTGCAC	2 cut(s)	1644, 1860
AlwI	GGATC	1 cut(s)	1221
Ama87I	CYCGRG	2 cut(s)	741, 1810
ApaLI	GTGCAC	2 cut(s)	1644, 1860
ApeKI	GCWGC	7 cut(s)	806, 1010, 1159, 1517, 1616, 1628, 1667
ApoI	RAATTY	2 cut(s)	1283, 1574
AseI	ATTAAT	1 cut(s)	1098
Asp700I	GAANNNNTTC	1 cut(s)	1534
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	739, 877, 1633
AspS9I	GGNCC	3 cut(s)	886, 959, 1451
AsuC2I	CCSGG	7 cut(s)	439, 691, 717, 1092, 1500, 1811, 1812
AsuHPI	GGTGA	6 cut(s)	143, 1346, 1888, 2035, 2141, 2245
AvaI	CYCGRG	2 cut(s)	741, 1810
AvaII	GGWCC	3 cut(s)	886, 959, 1451
BaeGI	GKGCMC	3 cut(s)	1610, 1648, 1864
BalI	TGGCCA	4 cut(s)	448, 755, 1769, 2252
BanI	GGYRCC	3 cut(s)	413, 736, 782
BanII	GRGCYC	1 cut(s)	748
BauI	CACGAG	1 cut(s)	1163
BbrPI	CACGTG	1 cut(s)	751
BbsI	GAAGAC	2 cut(s)	922, 1098
Bbv12I	GWGCWC	2 cut(s)	1648, 1864
BbvI	GCAGC	7 cut(s)	793, 1022, 1146, 1504, 1615, 1628, 1679
BccI	CCATC	6 cut(s)	24, 492, 818, 860, 1462, 1901
BceAI	ACGGC	4 cut(s)	421, 684, 1787, 2057
BciT130I	CCWGG	3 cut(s)	297, 1193, 1706
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1500, 1811, 1812
BcoDI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2174
BcuI	ACTAGT	1 cut(s)	1433
BfaI	CTAG	5 cut(s)	1014, 1434, 1446, 1758, 2293
BfmI	CTRYAG	2 cut(s)	174, 1665
BfoI	RGCGCY	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	1936
BisI	GCNGC	9 cut(s)	672, 730, 807, 1011, 1160, 1518, 1617, 1629, 1668
BlpI	GCTNAGC	1 cut(s)	2138
BlsI	GCNGC	9 cut(s)	673, 731, 808, 1012, 1161, 1519, 1618, 1630, 1669
Bme18I	GGWCC	3 cut(s)	886, 959, 1451
BmeT110I	CYCGRG	2 cut(s)	741, 1810
BmgT120I	GGNCC	3 cut(s)	886, 959, 1451
BmiI	GGNNCC	4 cut(s)	415, 738, 784, 888
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	1225
BmuI	ACTGGG	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	1737
BpiI	GAAGAC	2 cut(s)	922, 1098
BpmI	CTGGAG	3 cut(s)	279, 296, 1277
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	2138
BpuEI	CTTGAG	3 cut(s)	1229, 1463, 1989
BpuMI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1500, 1811, 1812
BsaAI	YACGTR	3 cut(s)	685, 751, 1846
BsaHI	GRCGYC	3 cut(s)	695, 737, 927
BsaI	GGTCTC	2 cut(s)	312, 1408
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 2020, 2079, 2206, 2248
Bse118I	RCCGGY	3 cut(s)	325, 391, 1753
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	1956
BseBI	CCWGG	3 cut(s)	297, 1193, 1706
BseGI	GGATG	8 cut(s)	108, 844, 1083, 1240, 1595, 1648, 1701, 2275
BseLI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 2020, 2079, 2206, 2248
BseMI	GCAATG	1 cut(s)	1956
BseMII	CTCAG	4 cut(s)	261, 924, 2129, 2275
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	3 cut(s)	1610, 1648, 1864
BseX3I	CGGCCG	1 cut(s)	669
BseXI	GCAGC	7 cut(s)	793, 1022, 1146, 1504, 1615, 1628, 1679
BseYI	CCCAGC	1 cut(s)	1619
BsgI	GTGCAG	3 cut(s)	1029, 1145, 1479
Bsh1236I	CGCG	1 cut(s)	1829
Bsh1285I	CGRYCG	1 cut(s)	672
BshNI	GGYRCC	3 cut(s)	413, 736, 782
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	1648, 1864
BsiHKCI	CYCGRG	2 cut(s)	741, 1810
BslFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1606, 1827
BslI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 2020, 2079, 2206, 2248
BsmAI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2174
BsmBI	CGTCTC	1 cut(s)	2174
BsmFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1606, 1827
BsmI	GAATGC	1 cut(s)	1141
Bso31I	GGTCTC	2 cut(s)	312, 1408
BsoBI	CYCGRG	2 cut(s)	741, 1810
Bsp1286I	GDGCHC	4 cut(s)	748, 1610, 1648, 1864
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
Bsp1720I	GCTNAGC	1 cut(s)	2138
Bsp19I	CCATGG	3 cut(s)	915, 1599, 1770
BspACI	CCGC	3 cut(s)	672, 729, 1778
BspCNI	CTCAG	4 cut(s)	262, 923, 2130, 2274
BspFNI	CGCG	1 cut(s)	1829
BspHI	TCATGA	2 cut(s)	88, 1131
BspLI	GGNNCC	4 cut(s)	415, 738, 784, 888
BspMAI	CTGCAG	1 cut(s)	1669
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	1221
BspQI	GCTCTTC	1 cut(s)	541
BspT107I	GGYRCC	3 cut(s)	413, 736, 782
BspTNI	GGTCTC	2 cut(s)	312, 1408
BsrBI	CCGCTC	1 cut(s)	1778
BsrDI	GCAATG	1 cut(s)	1956
BsrFI	RCCGGY	3 cut(s)	325, 391, 1753
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	3 cut(s)	325, 391, 1753
BssMI	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
BssNI	GRCGYC	3 cut(s)	695, 737, 927
BssSI	CACGAG	1 cut(s)	1163
BssT1I	CCWWGG	7 cut(s)	81, 915, 992, 1325, 1599, 1770, 1875
Bst2BI	CACGAG	1 cut(s)	1163
Bst2UI	CCWGG	3 cut(s)	297, 1193, 1706
Bst4CI	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2023, 2185
Bst6I	CTCTTC	3 cut(s)	211, 541, 667
BstACI	GRCGYC	3 cut(s)	695, 737, 927
BstAPI	GCANNNNNTGC	1 cut(s)	1244
BstAUI	TGTACA	1 cut(s)	759
BstBAI	YACGTR	3 cut(s)	685, 751, 1846
BstC8I	GCNNGC	4 cut(s)	727, 819, 1606, 2062
BstDEI	CTNAG	6 cut(s)	210, 270, 910, 1718, 2138, 2261
BstDSI	CCRYGG	3 cut(s)	915, 1599, 1770
BstEII	GGTNACC	2 cut(s)	2023, 2195
BstF5I	GGATG	8 cut(s)	108, 844, 1083, 1240, 1595, 1648, 1701, 2275
BstFNI	CGCG	1 cut(s)	1829
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	3 cut(s)	739, 877, 1633
BstKTI	GATC	5 cut(s)	151, 1027, 1216, 1904, 1939
BstMAI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2174
BstMBI	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1625, 1775
BstNI	CCWGG	3 cut(s)	297, 1193, 1706
BstNSI	RCATGY	3 cut(s)	1143, 1616, 2231
BstPAI	GACNNNNGTC	1 cut(s)	1737
BstPI	GGTNACC	2 cut(s)	2023, 2195
BstSFI	CTRYAG	2 cut(s)	174, 1665
BstSLI	GKGCMC	3 cut(s)	1610, 1648, 1864
BstSNI	TACGTA	1 cut(s)	1846
BstUI	CGCG	1 cut(s)	1829
BstV1I	GCAGC	7 cut(s)	793, 1022, 1146, 1504, 1615, 1628, 1679
BstV2I	GAAGAC	2 cut(s)	922, 1098
BstX2I	RGATCY	1 cut(s)	1936
BstXI	CCANNNNNNTGG	4 cut(s)	362, 498, 733, 2110
BstYI	RGATCY	1 cut(s)	1936
BstZI	CGGCCG	1 cut(s)	669
BtgI	CCRYGG	3 cut(s)	915, 1599, 1770
BtsCI	GGATG	8 cut(s)	108, 844, 1083, 1240, 1595, 1648, 1701, 2275
BtsIMutI	CAGTG	2 cut(s)	256, 2214
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	727, 819, 1606, 2062
CciI	TCATGA	2 cut(s)	88, 1131
CfoI	GCGC	3 cut(s)	739, 877, 1633
Cfr10I	RCCGGY	3 cut(s)	325, 391, 1753
Cfr13I	GGNCC	3 cut(s)	886, 959, 1451
Cfr9I	CCCGGG	1 cut(s)	1810
CseI	GACGC	5 cut(s)	479, 661, 684, 916, 1835
DdeI	CTNAG	6 cut(s)	210, 270, 910, 1718, 2138, 2261
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	5 cut(s)	150, 1026, 1215, 1903, 1938
DpnII	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	7 cut(s)	389, 446, 669, 687, 753, 1767, 2250
EagI	CGGCCG	1 cut(s)	669
Eam1104I	CTCTTC	3 cut(s)	211, 541, 667
EarI	CTCTTC	3 cut(s)	211, 541, 667
EclXI	CGGCCG	1 cut(s)	669
Eco105I	TACGTA	1 cut(s)	1846
Eco130I	CCWWGG	7 cut(s)	81, 915, 992, 1325, 1599, 1770, 1875
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	2 cut(s)	312, 1408
Eco47I	GGWCC	3 cut(s)	886, 959, 1451
Eco52I	CGGCCG	1 cut(s)	669
Eco57I	CTGAAG	2 cut(s)	294, 2238
Eco72I	CACGTG	1 cut(s)	751
Eco88I	CYCGRG	2 cut(s)	741, 1810
Eco91I	GGTNACC	2 cut(s)	2023, 2195
EcoO109I	RGGNCCY	2 cut(s)	886, 959
EcoO65I	GGTNACC	2 cut(s)	2023, 2195
EcoRI	GAATTC	2 cut(s)	1283, 1574
EcoRII	CCWGG	3 cut(s)	295, 1191, 1704
EcoT14I	CCWWGG	7 cut(s)	81, 915, 992, 1325, 1599, 1770, 1875
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	748
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	7 cut(s)	81, 915, 992, 1325, 1599, 1770, 1875
Esp3I	CGTCTC	1 cut(s)	2174
FalI	AAGNNNNNCTT	4 cut(s)	914, 946, 2126, 2158
FaqI	GGGAC	6 cut(s)	337, 647, 664, 788, 1606, 1827
FauI	CCCGC	1 cut(s)	1771
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	3 cut(s)	170, 2048, 2164
Fnu4HI	GCNGC	9 cut(s)	672, 730, 807, 1011, 1160, 1518, 1617, 1629, 1668
FokI	GGATG	8 cut(s)	95, 851, 1090, 1247, 1582, 1635, 1688, 2282
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	9 cut(s)	672, 730, 807, 1011, 1160, 1518, 1617, 1629, 1668
FspBI	CTAG	5 cut(s)	1014, 1434, 1446, 1758, 2293
GlaI	GCGC	3 cut(s)	738, 876, 1632
GluI	GCNGC	9 cut(s)	672, 730, 807, 1011, 1160, 1518, 1617, 1629, 1668
GsaI	CCCAGC	1 cut(s)	1623
GsuI	CTGGAG	3 cut(s)	279, 296, 1277
HaeII	RGCGCY	1 cut(s)	740
HgaI	GACGC	5 cut(s)	479, 661, 684, 916, 1835
HhaI	GCGC	3 cut(s)	739, 877, 1633
Hin1I	GRCGYC	3 cut(s)	695, 737, 927
Hin6I	GCGC	3 cut(s)	737, 875, 1631
HinP1I	GCGC	3 cut(s)	737, 875, 1631
HincII	GTYRAC	5 cut(s)	1552, 1807, 2049, 2165, 2225
HindII	GTYRAC	5 cut(s)	1552, 1807, 2049, 2165, 2225
HindIII	AAGCTT	2 cut(s)	460, 1381
HpaI	GTTAAC	2 cut(s)	1552, 1807
HphI	GGTGA	6 cut(s)	143, 1346, 1888, 2035, 2141, 2245
Hpy188I	TCNGA	6 cut(s)	484, 796, 860, 1699, 2015, 2269
Hpy99I	CGWCG	6 cut(s)	473, 644, 700, 1429, 1699, 2169
HpyAV	CCTTC	7 cut(s)	916, 950, 1325, 1959, 2010, 2120, 2213
HpyCH4III	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2023, 2185
HpyCH4IV	ACGT	6 cut(s)	684, 750, 1694, 1845, 2055, 2147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1625, 1775
HpyF3I	CTNAG	6 cut(s)	210, 270, 910, 1718, 2138, 2261
HpySE526I	ACGT	6 cut(s)	684, 750, 1694, 1845, 2055, 2147
Hsp92I	GRCGYC	3 cut(s)	695, 737, 927
HspAI	GCGC	3 cut(s)	737, 875, 1631
KasI	GGCGCC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	2 cut(s)	1552, 1807
Kzo9I	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	383, 718, 1775
Lsp1109I	GCAGC	7 cut(s)	793, 1022, 1146, 1504, 1615, 1628, 1679
LweI	GCATC	1 cut(s)	1225
MaeI	CTAG	5 cut(s)	1014, 1434, 1446, 1758, 2293
MaeII	ACGT	6 cut(s)	684, 750, 1694, 1845, 2055, 2147
MalI	GATC	5 cut(s)	150, 1026, 1215, 1903, 1938
MbiI	CCGCTC	1 cut(s)	1778
MboI	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
MfeI	CAATTG	2 cut(s)	1122, 1915
MflI	RGATCY	1 cut(s)	1936
MhlI	GDGCHC	4 cut(s)	748, 1610, 1648, 1864
MlsI	TGGCCA	4 cut(s)	448, 755, 1769, 2252
MluNI	TGGCCA	4 cut(s)	448, 755, 1769, 2252
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	7 cut(s)	365, 1075, 1330, 1669, 1809, 2103, 2253
MmeI	TCCRAC	3 cut(s)	120, 1677, 2071
Mox20I	TGGCCA	4 cut(s)	448, 755, 1769, 2252
Mph1103I	ATGCAT	1 cut(s)	1141
MroXI	GAANNNNTTC	1 cut(s)	1534
MscI	TGGCCA	4 cut(s)	448, 755, 1769, 2252
MslI	CAYNNNNRTG	3 cut(s)	113, 496, 1538
Msp20I	TGGCCA	4 cut(s)	448, 755, 1769, 2252
MspA1I	CMGCKG	3 cut(s)	674, 729, 1619
MunI	CAATTG	2 cut(s)	1122, 1915
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	3 cut(s)	297, 1193, 1706
MvnI	CGCG	1 cut(s)	1829
MwoI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1625, 1775
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1500, 1811, 1812
NcoI	CCATGG	3 cut(s)	915, 1599, 1770
NdeII	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
NlaIV	GGNNCC	4 cut(s)	415, 738, 784, 888
NmuCI	GTSAC	6 cut(s)	49, 607, 1028, 1142, 2023, 2065
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	3 cut(s)	1143, 1616, 2231
PagI	TCATGA	2 cut(s)	88, 1131
PceI	AGGCCT	1 cut(s)	281
PciI	ACATGT	1 cut(s)	2227
PciSI	GCTCTTC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	2 cut(s)	347, 2061
PctI	GAATGC	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	1534
PfeI	GAWTC	7 cut(s)	92, 119, 179, 585, 987, 1064, 1979
PflFI	GACNNNGTC	1 cut(s)	1693
PfoI	TCCNGGA	2 cut(s)	715, 1704
PkrI	GCNGC	9 cut(s)	673, 731, 808, 1012, 1161, 1519, 1618, 1630, 1669
PleI	GAGTC	7 cut(s)	365, 1075, 1329, 1668, 1809, 2102, 2253
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	751
PmlI	CACGTG	1 cut(s)	751
PpsI	GAGTC	7 cut(s)	365, 1075, 1329, 1668, 1809, 2102, 2253
Ppu21I	YACGTR	3 cut(s)	685, 751, 1846
PpuMI	RGGWCCY	2 cut(s)	886, 959
PscI	ACATGT	1 cut(s)	2227
PshAI	GACNNNNGTC	1 cut(s)	1737
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	2 cut(s)	886, 959
Psp6I	CCWGG	3 cut(s)	295, 1191, 1704
PspCI	CACGTG	1 cut(s)	751
PspEI	GGTNACC	2 cut(s)	2023, 2195
PspFI	CCCAGC	1 cut(s)	1619
PspGI	CCWGG	3 cut(s)	295, 1191, 1704
PspN4I	GGNNCC	4 cut(s)	415, 738, 784, 888
PspPI	GGNCC	3 cut(s)	886, 959, 1451
PspPPI	RGGWCCY	2 cut(s)	886, 959
PstI	CTGCAG	1 cut(s)	1669
PsuI	RGATCY	1 cut(s)	1936
PsyI	GACNNNGTC	1 cut(s)	1693
PvuII	CAGCTG	1 cut(s)	1619
RseI	CAYNNNNRTG	3 cut(s)	113, 496, 1538
SalI	GTCGAC	2 cut(s)	2047, 2163
SapI	GCTCTTC	1 cut(s)	541
SatI	GCNGC	9 cut(s)	672, 730, 807, 1011, 1160, 1518, 1617, 1629, 1668
Sau3AI	GATC	5 cut(s)	148, 1024, 1213, 1901, 1936
Sau96I	GGNCC	3 cut(s)	886, 959, 1451
SchI	GAGTC	7 cut(s)	365, 1075, 1330, 1669, 1809, 2103, 2253
SduI	GDGCHC	4 cut(s)	748, 1610, 1648, 1864
SfaNI	GCATC	1 cut(s)	1225
SfcI	CTRYAG	2 cut(s)	174, 1665
SfoI	GGCGCC	1 cut(s)	738
SinI	GGWCC	3 cut(s)	886, 959, 1451
SmaI	CCCGGG	1 cut(s)	1812
SmiMI	CAYNNNNRTG	3 cut(s)	113, 496, 1538
SmlI	CTYRAG	3 cut(s)	1208, 1478, 2004
SmoI	CTYRAG	3 cut(s)	1208, 1478, 2004
SnaBI	TACGTA	1 cut(s)	1846
SpeI	ACTAGT	1 cut(s)	1433
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	672, 729, 1778
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	5 cut(s)	1014, 1434, 1446, 1758, 2293
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	7 cut(s)	81, 915, 992, 1325, 1599, 1770, 1875
TaaI	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2023, 2185
TaiI	ACGT	6 cut(s)	687, 753, 1697, 1848, 2058, 2150
TaqI	TCGA	5 cut(s)	813, 1528, 1910, 2048, 2164
TatI	WGTACW	3 cut(s)	30, 184, 759
TauI	GCSGC	2 cut(s)	674, 732
TfiI	GAWTC	7 cut(s)	92, 119, 179, 585, 987, 1064, 1979
TscAI	CASTG	2 cut(s)	256, 2221
TseFI	GTSAC	6 cut(s)	49, 607, 1028, 1142, 2023, 2065
TseI	GCWGC	7 cut(s)	806, 1010, 1159, 1517, 1616, 1628, 1667
Tsp45I	GTSAC	6 cut(s)	49, 607, 1028, 1142, 2023, 2065
TspGWI	ACGGA	2 cut(s)	1057, 1917
TspMI	CCCGGG	1 cut(s)	1810
TspRI	CASTG	2 cut(s)	256, 2221
Tth111I	GACNNNGTC	1 cut(s)	1693
VneI	GTGCAC	2 cut(s)	1644, 1860
VpaK11BI	GGWCC	3 cut(s)	886, 959, 1451
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	2 cut(s)	1283, 1574
XbaI	TCTAGA	1 cut(s)	1445
XceI	RCATGY	3 cut(s)	1143, 1616, 2231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmaI	CCCGGG	1 cut(s)	1810
XmiI	GTMKAC	3 cut(s)	170, 2048, 2164
XmnI	GAANNNNTTC	1 cut(s)	1534
XspI	CTAG	5 cut(s)	1014, 1434, 1446, 1758, 2293
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.