Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Forward (+)

48983949 .. 48984823

Gene Structure 875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGGATCAATTGTGGTGTTCCTCTTCCTTTCATTTTCTATGCCCTTCAGCTTTTTCTGTTGGCTCTCCATGTTAACACTTCTATGGCAGAGAGATCCACTTATATTGTCCACATGGACAAGTCTTTCATGCCCAAGTTCTTCACTAGCCATCAACATTGGTATACCTCCATTATTGATTCCTTCAAAACAGAAATTCAAACCTCATTAGATAGCCACAGCTTCTCACCATCCCTTTTATACACCTATGATAATGCATTCAATGGTTTTTCTGCAGTTCTGTCTACAGATGAACTCAAGACCCTCAAAAAGTCCTCGGGTTTTGTTTCAACTTATAATGACAAAACTGTCACACTTGACACCACCCATACCACTACATTCCTCTCCCTCAACCCTTCTACTGGTTTGTTACCTGCTTCGAATTATGGTGAAGACATCATTGTTGTTTTCATTGATAGTGGGATCTGGCCAGAGAGCGATAACTTTAGAGATAATGGTCTGACCAAGAACATTCCAGCAAAGTGGAAGGGAAGATGTGAGAGACTCTATAGGCCATGGGACTCTCATACATCCCCCATCGCTACCGGGAACTTGGTGAATGGGGCATCGTATTTCGGTTATGCTAAAGGAACAGCTAGAGGTGTAGCACCACGTTCCAGGGTTGCCATGTACAAGTTCTGGTGGGATGAGGGTAGATACGCCTCTGATGTTCTAGCAGGCATGGATCAAGCAATTGCTGATGGTGTGGATGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

253

Amino Acids

28.17

Weight (kDa)

6.14

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 119	6.5e-17	Peptidase inhibitor I9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AasI	GACNNNNNNGTC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	421
AccI	GTMKAC	2 cut(s)	164, 284
AclWI	GGATC	4 cut(s)	14, 90, 470, 732
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	4 cut(s)	187, 200, 262, 330
AjnI	CCWGG	1 cut(s)	656
AluBI	AGCT	3 cut(s)	52, 222, 635
AluI	AGCT	3 cut(s)	52, 222, 635
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	4 cut(s)	14, 90, 470, 732
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	2 cut(s)	467, 551
ApoI	RAATTY	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	219, 440, 607
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	438
BccI	CCATC	4 cut(s)	159, 238, 584, 734
BciT130I	CCWGG	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	3 cut(s)	147, 636, 713
BfmI	CTRYAG	3 cut(s)	273, 285, 547
BfuAI	ACCTGC	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	586, 658
BmeT110I	CYCGRG	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	586, 658
BmsI	GCATC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	315, 554, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	658
BseDI	CCNNGG	3 cut(s)	315, 554, 657
BseGI	GGATG	4 cut(s)	230, 569, 691, 754
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	469, 553
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	469, 553
BsoBI	CYCGRG	1 cut(s)	316
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	4 cut(s)	6, 95, 462, 724
Bsp19I	CCATGG	1 cut(s)	554
BspANI	GGCC	2 cut(s)	469, 553
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	4 cut(s)	14, 90, 470, 732
BspT104I	TTCGAA	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	315, 554, 657
BssMI	GATC	4 cut(s)	6, 95, 462, 724
BssNAI	GTATAC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	554
Bst1107I	GTATAC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	718
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	230, 569, 691, 754
BstKTI	GATC	4 cut(s)	9, 98, 465, 727
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	6, 95, 462, 724
BstNI	CCWGG	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	584, 656
BstSFI	CTRYAG	3 cut(s)	273, 285, 547
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	95, 462
BstXI	CCANNNNNNTGG	1 cut(s)	522
BstYI	RGATCY	2 cut(s)	95, 462
BstZ17I	GTATAC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	469, 553
BtgI	CCRYGG	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	230, 569, 691, 754
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	718
Csp6I	GTAC	1 cut(s)	670
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	6 cut(s)	71, 115, 130, 555, 667, 721
CviJI	RGCY	8 cut(s)	52, 65, 150, 216, 222, 469, 553, 635
CviKI_1	RGCY	8 cut(s)	52, 65, 150, 216, 222, 469, 553, 635
CviQI	GTAC	1 cut(s)	670
DpnI	GATC	4 cut(s)	8, 97, 464, 726
DpnII	GATC	4 cut(s)	6, 95, 462, 724
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	6 cut(s)	74, 118, 133, 558, 670, 724
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	6 cut(s)	70, 114, 129, 554, 666, 720
FblI	GTMKAC	2 cut(s)	164, 284
FokI	GGATG	3 cut(s)	217, 556, 698
FspBI	CTAG	3 cut(s)	147, 636, 713
HaeIII	GGCC	2 cut(s)	469, 553
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	6 cut(s)	74, 118, 133, 558, 670, 724
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	179, 543, 560
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	3 cut(s)	219, 440, 607
Hpy166II	GTNNAC	4 cut(s)	76, 112, 165, 285
Hpy188I	TCNGA	2 cut(s)	501, 706
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	4 cut(s)	76, 112, 165, 285
HpyAV	CCTTC	4 cut(s)	56, 193, 405, 520
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	2 cut(s)	257, 275
HpySE526I	ACGT	1 cut(s)	652
Hsp92II	CATG	6 cut(s)	74, 118, 133, 558, 670, 724
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	6, 95, 462, 724
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	3 cut(s)	147, 636, 713
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	2 cut(s)	349, 408
MalI	GATC	4 cut(s)	8, 97, 464, 726
MboI	GATC	4 cut(s)	6, 95, 462, 724
MboII	GAAGA	4 cut(s)	17, 133, 443, 543
MfeI	CAATTG	2 cut(s)	10, 732
MflI	RGATCY	2 cut(s)	95, 462
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	4 cut(s)	10, 195, 421, 732
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	537, 554
Mox20I	TGGCCA	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	469
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	2 cut(s)	586, 658
MunI	CAATTG	2 cut(s)	10, 732
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	658
NciI	CCSGG	1 cut(s)	586
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	6, 95, 462, 724
NlaIII	CATG	6 cut(s)	74, 118, 133, 558, 670, 724
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	419
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	537, 554
PpsI	GAGTC	2 cut(s)	537, 554
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	95, 462
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	6, 95, 462, 724
SchI	GAGTC	2 cut(s)	537, 554
ScrFI	CCNGG	2 cut(s)	586, 658
SetI	ASST	9 cut(s)	54, 170, 206, 224, 248, 415, 637, 643, 655
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	3 cut(s)	273, 285, 547
SfuI	TTCGAA	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	10, 195, 421, 732
SspMI	CTAG	3 cut(s)	147, 636, 713
StyD4I	CCNGG	2 cut(s)	584, 656
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	419
TasI	AATT	4 cut(s)	10, 195, 421, 732
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	22, 118, 306, 439
XapI	RAATTY	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	164, 284
XspI	CTAG	3 cut(s)	147, 636, 713
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.