Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Forward (+)

24040793 .. 24041374

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCCCGGGGTCATTAGTTTTGGCTGCTTGGTCTCCCAAGGTTGCATCGGTTCAAATTGGGTTCATTGTGAATTTACCTAGCGACTACAATTTGATATCCGGGACATCCATGGCTTGCTCTCATGCTTCAGGTGTAGCTGAGCTACTGAAAGGTGCGCACCCAGGATGGAATGCAACAGCAATTAGGTCTGCTTTGATGGCCACAGCCAATCCATTGGACACTACTCGCAATCCATTTCTTGACGGTGACCATTTCAACTCTGCTTCACCATTAACCATGGGAACAGGTCGCATCGATCCTAATAGAGCACTTGAGCCGGGCCTAACATACGATGCTACCTCGCAAGAGTATGTCAATCTCTTATGCTCCACGAATTTTACGCACAAGGGTTCAAACATTTCAGAGGACTGTGACAAGTGTGGGAGATGGCGCGGCTCAGTACATGGCTCCGGTGACTGCTCCAAAGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

159

Amino Acids

16.62

Weight (kDa)

6.16

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	18 - 75	2e-09	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	73, 376
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	56, 259, 396
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	140, 145
AluI	AGCT	2 cut(s)	140, 145
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	3, 201, 322
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	73, 376
AspLEI	GCGC	2 cut(s)	160, 435
AspS9I	GGNCC	2 cut(s)	4, 322
AsuC2I	CCSGG	4 cut(s)	8, 9, 103, 321
AsuHPI	GGTGA	3 cut(s)	260, 261, 467
AvaI	CYCGRG	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	3 cut(s)	162, 193, 423
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	4 cut(s)	8, 9, 103, 321
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	27, 436
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	28, 437
Bme1390I	CCNGG	5 cut(s)	8, 9, 103, 165, 321
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	4, 322
BmiI	GGNNCC	2 cut(s)	6, 451
BmrFI	CCNGG	5 cut(s)	8, 9, 103, 165, 321
BmsI	GCATC	3 cut(s)	56, 303, 325
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	4 cut(s)	8, 9, 103, 321
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	7 cut(s)	6, 7, 8, 39, 111, 163, 279
BsaWI	WCCGGW	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	7 cut(s)	6, 7, 8, 39, 111, 163, 279
BseGI	GGATG	2 cut(s)	107, 173
BseMII	CTCAG	2 cut(s)	132, 453
BseXI	GCAGC	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	5, 203, 324
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	4 cut(s)	8, 102, 320, 453
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	5, 203, 324
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	141
Bsp19I	CCATGG	2 cut(s)	111, 279
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	5, 203, 324
BspCNI	CTCAG	2 cut(s)	133, 452
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	6, 451
BspPI	GGATC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	39
BssECI	CCNNGG	7 cut(s)	6, 7, 8, 39, 111, 163, 279
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	39, 111, 279
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	248, 413
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	141, 439
BstDSI	CCRYGG	2 cut(s)	111, 279
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	107, 173
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	160, 435
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	5 cut(s)	6, 7, 101, 163, 319
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	5, 203, 324
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	2 cut(s)	111, 279
BtsCI	GGATG	2 cut(s)	107, 173
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	160, 435
Cfr13I	GGNCC	2 cut(s)	4, 322
Cfr9I	CCCGGG	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	4 cut(s)	112, 125, 280, 446
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	2 cut(s)	141, 439
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	201
Eco130I	CCWWGG	3 cut(s)	39, 111, 279
Eco31I	GGTCTC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	3 cut(s)	39, 111, 279
ErhI	CCWWGG	3 cut(s)	39, 111, 279
FaeI	CATG	4 cut(s)	115, 128, 283, 449
FaiI	YATR	7 cut(s)	113, 126, 281, 331, 354, 367, 447
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	4 cut(s)	111, 124, 279, 445
Fnu4HI	GCNGC	2 cut(s)	27, 436
FokI	GGATG	2 cut(s)	94, 180
Fsp4HI	GCNGC	2 cut(s)	27, 436
FspAI	RTGCGCAY	1 cut(s)	159
FspBI	CTAG	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	159, 434
GluI	GCNGC	2 cut(s)	27, 436
HaeIII	GGCC	3 cut(s)	5, 203, 324
HapII	CCGG	4 cut(s)	8, 102, 320, 453
HhaI	GCGC	2 cut(s)	160, 435
Hin1II	CATG	4 cut(s)	115, 128, 283, 449
Hin6I	GCGC	2 cut(s)	158, 433
HinP1I	GCGC	2 cut(s)	158, 433
HpaII	CCGG	4 cut(s)	8, 102, 320, 453
HphI	GGTGA	3 cut(s)	260, 261, 467
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	248, 413
HpyCH4V	TGCA	2 cut(s)	47, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	141, 439
Hsp92II	CATG	4 cut(s)	115, 128, 283, 449
HspAI	GCGC	2 cut(s)	158, 433
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	374, 455, 467
LpnPI	CCDG	8 cut(s)	21, 115, 117, 150, 177, 273, 333, 466
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	3 cut(s)	56, 303, 325
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	248, 413, 455
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	5 cut(s)	57, 73, 91, 183, 376
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	2 cut(s)	352, 400
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	4 cut(s)	8, 102, 320, 453
MspR9I	CCNGG	5 cut(s)	8, 9, 103, 165, 321
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	4 cut(s)	8, 9, 103, 321
NcoI	CCATGG	2 cut(s)	111, 279
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	4 cut(s)	115, 128, 283, 449
NlaIV	GGNNCC	2 cut(s)	6, 451
NmuCI	GTSAC	3 cut(s)	248, 413, 455
NsbI	TGCGCA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	28, 437
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	6, 451
PspPI	GGNCC	2 cut(s)	4, 322
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	27, 436
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	4, 322
ScrFI	CCNGG	5 cut(s)	8, 9, 103, 165, 321
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	9 cut(s)	45, 82, 136, 142, 147, 157, 191, 292, 344
SfaNI	GCATC	3 cut(s)	56, 303, 325
SmaI	CCCGGG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	57, 73, 91, 183, 376
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	5 cut(s)	6, 7, 101, 163, 319
StyI	CCWWGG	3 cut(s)	39, 111, 279
TaaI	ACNGT	2 cut(s)	248, 413
TaqI	TCGA	1 cut(s)	297
TasI	AATT	5 cut(s)	57, 73, 91, 183, 376
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	3 cut(s)	248, 413, 455
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	3 cut(s)	248, 413, 455
TspDTI	ATGAA	1 cut(s)	55
TspMI	CCCGGG	1 cut(s)	7
XapI	RAATTY	2 cut(s)	73, 376
XmaI	CCCGGG	1 cut(s)	7
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.