Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Forward (+)

3429230 .. 3431298

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGGCTACTCATAACCATCATGTTCCCTTGTACTTGTGGCTTTCCATTGTCACAATCTCAAACCTTGCCATGGTCTCCACCTTGGCTCATGAATCCAACAATTATATCATCCACATGGATTCATCATTTATGCCCAAAGCCTTTGCTGATCACCATTCTTGGTACTTGTCCACTGTAGATTCTGTACTATCCACTTCTTCTATCTCTTCTAAGCTCATTTATAGCTACACTCATGTCTTAAACGGGTTCAGTGCAAGTCTCTCTGTTCCTGAGCTGGAGGCCTTAAAAACCTCTCCAGGGTACATATCTTCAGTTAGAGACCTGCCAGTAAAACGCGACACGACCCACTCGTCCCAGTTTCTTGGCCTTAACTCCAAGACGGGAGCATGGCCGGTGTCCAATTACGGCAAAGGTACCATTATTGGTTTGGTGGACACCGGGGTTTGGCCAGAAAACGAAAGTTTTAACGACGCTGGAATGTCAGAAATCCCACCAAGATGGAAAGGAGAATGTGAAAGTGGTACACAATTCAGCTCTTCATTGTGCAACAAAAAGCTTATTGGGGCAAGGTTCTTTAACAAAGGAATCGTAGCCCAAGCGCCCAATGTGACATTCACCATGAACTCCACAAGGGACACCGACGGTCATGGGACTCACACCTCTTCTACGGCCGCTGGAAACTATGTGGCCGGGGCATCGTACTTTAATTATGCGCCGGGAACTGCCAGCGGCATGGCGCCTCGGGCTCATGTGGCCATGTACAAGGCTCTGTGGGACGAGGGTGCCTTATCGTCTGACATAATTGCTGCCATCGAGCAAGCAGTTGTGGACGGTGTGGATGTCTTATCCCTGTCGTTCGGATTTGATGGCGTTGCGCTGTACGAGGACCCTGTTGCCATAGCCACATTCTCAGCCATGGAGAAGGGCGTCTTCGTTTCCACATCGGCAGGAAATGAAGGACCTTTGTATGGTACATTGCATAATGGAATCCCTTGGGTTCTAACAGTTGCAGCTAGTACCATTGATCGTGACTTTCAAGGAACTGCACATCTTGGAAATGGAGAATCCGTTACAGGGATGACTCTTTTTCCGGGGATTAATTCGTCTTCAACTCCAATCCCAATTGTTTTCATGAATGCATGTGACAATTTGAAGGAGCTGAACAAGGTTGGGAACAAAATCGTGTTGTGCCAGGACAACAATTCAATTGAGGATCAATATGTTACTGTTCAAGATGCAAATGTTGCCGGAGGTATCTTCATTACCAACAACACCGACTTGGAATTGTTCCTCCAGAGCCAATTTCCCACACTTTTTTTGAGTCCAAAGGAAGGTGAAACTATCAAAGACTACATCAACAGCAACTCTAACCCGAAAACACTTCTTGGTGTGAGACCAGCACCCACGGTTACTAGTTACACATCTAGAGGTCCATCTTCCAGCTTCCCCTTTACTCTCAAGCCGGACATTAGTGCACCGGGTTCACTAATCCTCGCTGCATGGCCTCTAAACATTTCGGTGGCAACTGTTAACAAAACAGGACCTGTTTTTAGCGAATTCAATTTGTTGTCGGGGACATCCATGGCGTGCCCACATGCAGCTGGGTTAGCTGCGCTTGTGAAAGGTGCACATCCTGAATGGAGTCCTGCAGCTATCAGGTCAGCTATGATGACTACGTCGGACATCCTGGATAACACACTTAGTTCCATTAAGGACATTGGTGATCATTTGCTACCGGCTAGTCCTCTGGCCATGGGAGCAGGTCATGTCAATCCCAACAAGGCCCTTAACCCGGGACTCATATATGACGCGACCATAGATGATTACGTAAATCTCCTTTGTGCACTAAACTACACCAAGGAACAAATCCAAACCATCACCAGATCAGCCTCGAACAATTGTTCATCTCCGTCATTAGATCTTAATTACCCTTCGTTCATTGCATTTTTCAATGTCAATGATTCAAAGTCGGGAGTACAAACCACTCAAGAGTTCCCAAGGACGGTGACCAATGTAGGAAAGGGGAGTCGACATACATTGCAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

682

Amino Acids

72.77

Weight (kDa)

5.52

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 111	7.3e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	136 - 561	4.1e-44	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	330, 1751
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	3 cut(s)	413, 736, 782
AccI	GTMKAC	1 cut(s)	2029
AccII	CGCG	2 cut(s)	336, 1811
AciI	CCGC	2 cut(s)	672, 729
AclWI	GGATC	1 cut(s)	1221
AcoI	YGGCCR	6 cut(s)	389, 446, 669, 687, 753, 1749
AcsI	RAATTY	1 cut(s)	1556
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	2 cut(s)	737, 927
AfiI	CCNNNNNNNGG	8 cut(s)	70, 297, 444, 968, 1074, 1331, 1792, 2002
AgsI	TTSAA	8 cut(s)	1037, 1110, 1153, 1206, 1232, 1561, 1951, 1965
AhlI	ACTAGT	1 cut(s)	1412
AjnI	CCWGG	3 cut(s)	295, 1191, 1686
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
Alw21I	GWGCWC	3 cut(s)	1477, 1630, 1846
Alw26I	GTCTC	4 cut(s)	79, 263, 312, 1387
Alw44I	GTGCAC	3 cut(s)	1473, 1626, 1842
AlwI	GGATC	1 cut(s)	1221
AlwNI	CAGNNNCTG	1 cut(s)	1544
Ama87I	CYCGRG	2 cut(s)	741, 1792
ApaLI	GTGCAC	3 cut(s)	1473, 1626, 1842
ApeKI	GCWGC	6 cut(s)	806, 1010, 1496, 1598, 1610, 1649
ApoI	RAATTY	1 cut(s)	1556
AseI	ATTAAT	1 cut(s)	1098
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	5 cut(s)	601, 715, 739, 877, 1615
AspS9I	GGNCC	5 cut(s)	886, 959, 1430, 1541, 1783
AsuC2I	CCSGG	7 cut(s)	439, 691, 717, 1092, 1479, 1793, 1794
AsuHPI	GGTGA	6 cut(s)	143, 607, 1346, 1733, 1870, 2017
AvaI	CYCGRG	2 cut(s)	741, 1792
AvaII	GGWCC	4 cut(s)	886, 959, 1430, 1541
BaeGI	GKGCMC	4 cut(s)	1477, 1592, 1630, 1846
BalI	TGGCCA	3 cut(s)	448, 755, 1751
BanI	GGYRCC	3 cut(s)	413, 736, 782
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	2 cut(s)	922, 1098
Bbv12I	GWGCWC	3 cut(s)	1477, 1630, 1846
BbvI	GCAGC	6 cut(s)	793, 1022, 1483, 1597, 1610, 1661
BccI	CCATC	6 cut(s)	24, 492, 818, 860, 1441, 1883
BceAI	ACGGC	2 cut(s)	421, 684
BciT130I	CCWGG	3 cut(s)	297, 1193, 1688
BclI	TGATCA	2 cut(s)	148, 1723
BcnI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1479, 1793, 1794
BcoDI	GTCTC	4 cut(s)	79, 263, 312, 1387
BcuI	ACTAGT	1 cut(s)	1412
BfaI	CTAG	4 cut(s)	1014, 1413, 1425, 1740
BfmI	CTRYAG	2 cut(s)	174, 1647
BfoI	RGCGCY	2 cut(s)	602, 740
BfuAI	ACCTGC	2 cut(s)	330, 1751
BglII	AGATCT	1 cut(s)	1918
BisI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1497, 1599, 1611, 1650
BlsI	GCNGC	8 cut(s)	673, 731, 808, 1012, 1498, 1600, 1612, 1651
Bme18I	GGWCC	4 cut(s)	886, 959, 1430, 1541
BmeT110I	CYCGRG	2 cut(s)	741, 1792
BmgT120I	GGNCC	5 cut(s)	886, 959, 1430, 1541, 1783
BmiI	GGNNCC	4 cut(s)	415, 738, 784, 888
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	704, 1225
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	922, 1098
BpmI	CTGGAG	3 cut(s)	279, 296, 1277
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	1442, 1971
BpuMI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1479, 1793, 1794
BsaAI	YACGTR	1 cut(s)	1828
BsaHI	GRCGYC	2 cut(s)	737, 927
BsaI	GGTCTC	3 cut(s)	79, 312, 1387
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	8 cut(s)	70, 297, 444, 968, 1074, 1331, 1792, 2002
Bse118I	RCCGGY	2 cut(s)	391, 1735
Bse1I	ACTGG	2 cut(s)	326, 355
Bse3DI	GCAATG	3 cut(s)	974, 1938, 2036
BseBI	CCWGG	3 cut(s)	297, 1193, 1688
BseGI	GGATG	6 cut(s)	108, 844, 1083, 1577, 1630, 1683
BseLI	CCNNNNNNNGG	8 cut(s)	70, 297, 444, 968, 1074, 1331, 1792, 2002
BseMI	GCAATG	3 cut(s)	974, 1938, 2036
BseMII	CTCAG	2 cut(s)	261, 924
BseNI	ACTGG	2 cut(s)	326, 355
BseSI	GKGCMC	4 cut(s)	1477, 1592, 1630, 1846
BseX3I	CGGCCG	1 cut(s)	669
BseXI	GCAGC	6 cut(s)	793, 1022, 1483, 1597, 1610, 1661
BseYI	CCCAGC	1 cut(s)	1601
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	2 cut(s)	336, 1811
Bsh1285I	CGRYCG	1 cut(s)	672
BshNI	GGYRCC	3 cut(s)	413, 736, 782
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	3 cut(s)	1477, 1630, 1846
BsiHKCI	CYCGRG	2 cut(s)	741, 1792
BslFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1588, 1809
BslI	CCNNNNNNNGG	8 cut(s)	70, 297, 444, 968, 1074, 1331, 1792, 2002
BsmAI	GTCTC	4 cut(s)	79, 263, 312, 1387
BsmFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1588, 1809
BsmI	GAATGC	1 cut(s)	1141
Bso31I	GGTCTC	3 cut(s)	79, 312, 1387
BsoBI	CYCGRG	2 cut(s)	741, 1792
Bsp1286I	GDGCHC	5 cut(s)	748, 1477, 1592, 1630, 1846
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
Bsp19I	CCATGG	4 cut(s)	69, 915, 1581, 1752
BspACI	CCGC	2 cut(s)	672, 729
BspCNI	CTCAG	2 cut(s)	262, 923
BspFNI	CGCG	2 cut(s)	336, 1811
BspHI	TCATGA	2 cut(s)	88, 1131
BspLI	GGNNCC	4 cut(s)	415, 738, 784, 888
BspMAI	CTGCAG	1 cut(s)	1651
BspMI	ACCTGC	2 cut(s)	330, 1751
BspPI	GGATC	1 cut(s)	1221
BspQI	GCTCTTC	1 cut(s)	541
BspT107I	GGYRCC	3 cut(s)	413, 736, 782
BspTNI	GGTCTC	3 cut(s)	79, 312, 1387
BsrDI	GCAATG	3 cut(s)	974, 1938, 2036
BsrFI	RCCGGY	2 cut(s)	391, 1735
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	2 cut(s)	326, 355
BssAI	RCCGGY	2 cut(s)	391, 1735
BssMI	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
BssNI	GRCGYC	2 cut(s)	737, 927
BssT1I	CCWWGG	8 cut(s)	69, 81, 915, 992, 1581, 1752, 1857, 1997
Bst2UI	CCWGG	3 cut(s)	297, 1193, 1688
Bst4CI	ACNGT	8 cut(s)	175, 644, 833, 1006, 1228, 1408, 1528, 2005
Bst6I	CTCTTC	3 cut(s)	211, 541, 667
BstACI	GRCGYC	2 cut(s)	737, 927
BstAPI	GCANNNNNTGC	1 cut(s)	1244
BstAUI	TGTACA	1 cut(s)	759
BstBAI	YACGTR	1 cut(s)	1828
BstC8I	GCNNGC	4 cut(s)	727, 819, 1588, 2043
BstDEI	CTNAG	4 cut(s)	210, 270, 910, 1700
BstDSI	CCRYGG	5 cut(s)	69, 915, 1404, 1581, 1752
BstEII	GGTNACC	1 cut(s)	2005
BstF5I	GGATG	6 cut(s)	108, 844, 1083, 1577, 1630, 1683
BstFNI	CGCG	2 cut(s)	336, 1811
BstH2I	RGCGCY	2 cut(s)	602, 740
BstHHI	GCGC	5 cut(s)	601, 715, 739, 877, 1615
BstKTI	GATC	6 cut(s)	151, 1027, 1216, 1726, 1886, 1921
BstMAI	GTCTC	4 cut(s)	79, 263, 312, 1387
BstMBI	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1607, 1757
BstNI	CCWGG	3 cut(s)	297, 1193, 1688
BstNSI	RCATGY	2 cut(s)	1143, 1598
BstPI	GGTNACC	1 cut(s)	2005
BstSFI	CTRYAG	2 cut(s)	174, 1647
BstSLI	GKGCMC	4 cut(s)	1477, 1592, 1630, 1846
BstSNI	TACGTA	1 cut(s)	1828
BstUI	CGCG	2 cut(s)	336, 1811
BstV1I	GCAGC	6 cut(s)	793, 1022, 1483, 1597, 1610, 1661
BstV2I	GAAGAC	2 cut(s)	922, 1098
BstX2I	RGATCY	1 cut(s)	1918
BstXI	CCANNNNNNTGG	3 cut(s)	362, 498, 733
BstYI	RGATCY	1 cut(s)	1918
BstZI	CGGCCG	1 cut(s)	669
BtgI	CCRYGG	5 cut(s)	69, 915, 1404, 1581, 1752
BtsCI	GGATG	6 cut(s)	108, 844, 1083, 1577, 1630, 1683
BtsIMutI	CAGTG	2 cut(s)	171, 256
BveI	ACCTGC	2 cut(s)	330, 1751
Cac8I	GCNNGC	4 cut(s)	727, 819, 1588, 2043
CaiI	CAGNNNCTG	1 cut(s)	1544
CciI	TCATGA	2 cut(s)	88, 1131
CfoI	GCGC	5 cut(s)	601, 715, 739, 877, 1615
Cfr10I	RCCGGY	2 cut(s)	391, 1735
Cfr13I	GGNCC	5 cut(s)	886, 959, 1430, 1541, 1783
Cfr9I	CCCGGG	1 cut(s)	1792
CseI	GACGC	3 cut(s)	479, 916, 1817
DdeI	CTNAG	4 cut(s)	210, 270, 910, 1700
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	6 cut(s)	150, 1026, 1215, 1725, 1885, 1920
DpnII	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	6 cut(s)	389, 446, 669, 687, 753, 1749
EagI	CGGCCG	1 cut(s)	669
Eam1104I	CTCTTC	3 cut(s)	211, 541, 667
EarI	CTCTTC	3 cut(s)	211, 541, 667
EclXI	CGGCCG	1 cut(s)	669
Eco105I	TACGTA	1 cut(s)	1828
Eco130I	CCWWGG	8 cut(s)	69, 81, 915, 992, 1581, 1752, 1857, 1997
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	3 cut(s)	79, 312, 1387
Eco47I	GGWCC	4 cut(s)	886, 959, 1430, 1541
Eco52I	CGGCCG	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	741, 1792
Eco91I	GGTNACC	1 cut(s)	2005
EcoO109I	RGGNCCY	4 cut(s)	886, 959, 1541, 1783
EcoO65I	GGTNACC	1 cut(s)	2005
EcoRI	GAATTC	1 cut(s)	1556
EcoRII	CCWGG	3 cut(s)	295, 1191, 1686
EcoT14I	CCWWGG	8 cut(s)	69, 81, 915, 992, 1581, 1752, 1857, 1997
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	748
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	8 cut(s)	69, 81, 915, 992, 1581, 1752, 1857, 1997
FalI	AAGNNNNNCTT	2 cut(s)	914, 946
FaqI	GGGAC	6 cut(s)	337, 647, 664, 788, 1588, 1809
FbaI	TGATCA	2 cut(s)	148, 1723
FblI	GTMKAC	1 cut(s)	2029
Fnu4HI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1497, 1599, 1611, 1650
FokI	GGATG	6 cut(s)	95, 851, 1090, 1564, 1617, 1670
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1497, 1599, 1611, 1650
FspBI	CTAG	4 cut(s)	1014, 1413, 1425, 1740
GlaI	GCGC	5 cut(s)	600, 714, 738, 876, 1614
GluI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1497, 1599, 1611, 1650
GsaI	CCCAGC	1 cut(s)	1605
GsuI	CTGGAG	3 cut(s)	279, 296, 1277
HaeII	RGCGCY	2 cut(s)	602, 740
HgaI	GACGC	3 cut(s)	479, 916, 1817
HhaI	GCGC	5 cut(s)	601, 715, 739, 877, 1615
Hin1I	GRCGYC	2 cut(s)	737, 927
Hin6I	GCGC	5 cut(s)	599, 713, 737, 875, 1613
HinP1I	GCGC	5 cut(s)	599, 713, 737, 875, 1613
HincII	GTYRAC	2 cut(s)	1531, 2030
HindII	GTYRAC	2 cut(s)	1531, 2030
HindIII	AAGCTT	1 cut(s)	554
HpaI	GTTAAC	1 cut(s)	1531
HphI	GGTGA	6 cut(s)	143, 607, 1346, 1733, 1870, 2017
Hpy188I	TCNGA	4 cut(s)	484, 796, 860, 1681
Hpy99I	CGWCG	3 cut(s)	473, 644, 1681
HpyAV	CCTTC	5 cut(s)	916, 950, 1147, 1325, 1941
HpyCH4III	ACNGT	8 cut(s)	175, 644, 833, 1006, 1228, 1408, 1528, 2005
HpyCH4IV	ACGT	2 cut(s)	1676, 1827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1607, 1757
HpyF3I	CTNAG	4 cut(s)	210, 270, 910, 1700
HpySE526I	ACGT	2 cut(s)	1676, 1827
Hsp92I	GRCGYC	2 cut(s)	737, 927
HspAI	GCGC	5 cut(s)	599, 713, 737, 875, 1613
KasI	GGCGCC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	417
Ksp22I	TGATCA	2 cut(s)	148, 1723
KspAI	GTTAAC	1 cut(s)	1531
Kzo9I	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	383, 1156, 1757
Lsp1109I	GCAGC	6 cut(s)	793, 1022, 1483, 1597, 1610, 1661
LweI	GCATC	2 cut(s)	704, 1225
MaeI	CTAG	4 cut(s)	1014, 1413, 1425, 1740
MaeII	ACGT	2 cut(s)	1676, 1827
MaeIII	GTNAC	9 cut(s)	49, 607, 1028, 1069, 1142, 1222, 1408, 1415, 2005
MalI	GATC	6 cut(s)	150, 1026, 1215, 1725, 1885, 1920
MboI	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
MboII	GAAGA	9 cut(s)	189, 198, 300, 528, 654, 922, 1098, 1249, 1428
MfeI	CAATTG	3 cut(s)	1122, 1206, 1897
MflI	RGATCY	1 cut(s)	1918
MhlI	GDGCHC	5 cut(s)	748, 1477, 1592, 1630, 1846
MlsI	TGGCCA	3 cut(s)	448, 755, 1751
MluNI	TGGCCA	3 cut(s)	448, 755, 1751
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	6 cut(s)	646, 1075, 1330, 1651, 1791, 2035
MmeI	TCCRAC	2 cut(s)	120, 1659
Mox20I	TGGCCA	3 cut(s)	448, 755, 1751
Mph1103I	ATGCAT	1 cut(s)	1141
MscI	TGGCCA	3 cut(s)	448, 755, 1751
MslI	CAYNNNNRTG	3 cut(s)	113, 496, 1517
Msp20I	TGGCCA	3 cut(s)	448, 755, 1751
MspA1I	CMGCKG	3 cut(s)	674, 729, 1601
MunI	CAATTG	3 cut(s)	1122, 1206, 1897
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	3 cut(s)	297, 1193, 1688
MvnI	CGCG	2 cut(s)	336, 1811
MwoI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1607, 1757
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	7 cut(s)	439, 691, 717, 1092, 1479, 1793, 1794
NcoI	CCATGG	4 cut(s)	69, 915, 1581, 1752
NdeII	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
NlaIV	GGNNCC	4 cut(s)	415, 738, 784, 888
NmuCI	GTSAC	5 cut(s)	49, 607, 1028, 1142, 2005
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	2 cut(s)	1143, 1598
PagI	TCATGA	2 cut(s)	88, 1131
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	1 cut(s)	1141
PfeI	GAWTC	7 cut(s)	92, 119, 179, 585, 987, 1064, 1961
PflFI	GACNNNGTC	1 cut(s)	1675
PfoI	TCCNGGA	1 cut(s)	1686
PkrI	GCNGC	8 cut(s)	673, 731, 808, 1012, 1498, 1600, 1612, 1651
PleI	GAGTC	6 cut(s)	646, 1075, 1329, 1650, 1791, 2034
PluTI	GGCGCC	1 cut(s)	740
PpsI	GAGTC	6 cut(s)	646, 1075, 1329, 1650, 1791, 2034
Ppu21I	YACGTR	1 cut(s)	1828
PpuMI	RGGWCCY	3 cut(s)	886, 959, 1541
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	3 cut(s)	886, 959, 1541
Psp6I	CCWGG	3 cut(s)	295, 1191, 1686
PspEI	GGTNACC	1 cut(s)	2005
PspFI	CCCAGC	1 cut(s)	1601
PspGI	CCWGG	3 cut(s)	295, 1191, 1686
PspN4I	GGNNCC	4 cut(s)	415, 738, 784, 888
PspPI	GGNCC	5 cut(s)	886, 959, 1430, 1541, 1783
PspPPI	RGGWCCY	3 cut(s)	886, 959, 1541
PstI	CTGCAG	1 cut(s)	1651
PstNI	CAGNNNCTG	1 cut(s)	1544
PsuI	RGATCY	1 cut(s)	1918
PsyI	GACNNNGTC	1 cut(s)	1675
PvuII	CAGCTG	1 cut(s)	1601
RseI	CAYNNNNRTG	3 cut(s)	113, 496, 1517
SalI	GTCGAC	1 cut(s)	2028
SapI	GCTCTTC	1 cut(s)	541
SatI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1497, 1599, 1611, 1650
Sau3AI	GATC	6 cut(s)	148, 1024, 1213, 1723, 1883, 1918
Sau96I	GGNCC	5 cut(s)	886, 959, 1430, 1541, 1783
SchI	GAGTC	6 cut(s)	646, 1075, 1330, 1651, 1791, 2035
SduI	GDGCHC	5 cut(s)	748, 1477, 1592, 1630, 1846
SfaNI	GCATC	2 cut(s)	704, 1225
SfcI	CTRYAG	2 cut(s)	174, 1647
SfoI	GGCGCC	1 cut(s)	738
SinI	GGWCC	4 cut(s)	886, 959, 1430, 1541
SmaI	CCCGGG	1 cut(s)	1794
SmiMI	CAYNNNNRTG	3 cut(s)	113, 496, 1517
SmlI	CTYRAG	2 cut(s)	1457, 1986
SmoI	CTYRAG	2 cut(s)	1457, 1986
SnaBI	TACGTA	1 cut(s)	1828
SpeI	ACTAGT	1 cut(s)	1412
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	2 cut(s)	672, 729
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	4 cut(s)	1014, 1413, 1425, 1740
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	8 cut(s)	69, 81, 915, 992, 1581, 1752, 1857, 1997
TaaI	ACNGT	8 cut(s)	175, 644, 833, 1006, 1228, 1408, 1528, 2005
TaiI	ACGT	2 cut(s)	1679, 1830
TaqI	TCGA	3 cut(s)	813, 1892, 2029
TatI	WGTACW	4 cut(s)	30, 184, 759, 1975
TauI	GCSGC	2 cut(s)	674, 732
TfiI	GAWTC	7 cut(s)	92, 119, 179, 585, 987, 1064, 1961
TscAI	CASTG	2 cut(s)	178, 256
TseFI	GTSAC	5 cut(s)	49, 607, 1028, 1142, 2005
TseI	GCWGC	6 cut(s)	806, 1010, 1496, 1598, 1610, 1649
Tsp45I	GTSAC	5 cut(s)	49, 607, 1028, 1142, 2005
TspGWI	ACGGA	2 cut(s)	1057, 1899
TspMI	CCCGGG	1 cut(s)	1792
TspRI	CASTG	2 cut(s)	178, 256
Tth111I	GACNNNGTC	1 cut(s)	1675
VneI	GTGCAC	3 cut(s)	1473, 1626, 1842
VpaK11BI	GGWCC	4 cut(s)	886, 959, 1430, 1541
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	1 cut(s)	1556
XbaI	TCTAGA	1 cut(s)	1424
XceI	RCATGY	2 cut(s)	1143, 1598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmaI	CCCGGG	1 cut(s)	1792
XmiI	GTMKAC	1 cut(s)	2029
XspI	CTAG	4 cut(s)	1014, 1413, 1425, 1740
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.