Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001268

Physical Location & Seq

Genomic Coordinates Reverse (-)

64154710 .. 64157993

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG475800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGCTACTCATAACCATCATGTTCCCTTGTACTTGTGGCTTTCCATTGTCACAATCTCAAACCTTGCCATAGTCTCCAGCTTGGCTCATGAATCCAACAATTATATCATCCACATGGATTCATCATTTATGCCCAAAGCCTTTGCTGATCACCATTCTTGGTACTTGTCCACTGTACATTCTGTACTATCCACTTCTTCCATCTCTTCTAAGCTCATTTATAGCTACACTCATGTCTTAAACGGGTTCAGTGCAAGTCTCTCTGTTCCTGAGCTGGAGGCCTTAAAAACCTCTCCAGGGTACATATCTTCAGTTAGAGACCTGCCGGTAAAACGTGACACGACCCACTCGTCCCAGTTTCTTGGCCTTAACTCCAAGACGGGAGCGTGGCCGGTGTCCAATTACGGCAAAGGTACCATTATTGGTTTGGTGGACACCGGGGTTTGGCCAGAAAACGAAAGCTTTAACGACGCTGGAATGTCAGAAATCCCACCAAGATGGAAAGGAGAATGTGAAAGTGGTACGCAATTCAGCTCTTCATTGTGCAACAAAAAGCTCATTGGGGCAAGGTTCTTTAACAAAGGAATCGTAGCCCGTGACCCCAATGTGACATTCACCATGAACTCCACAAGGGACATCGACGGTCATGGGACGCACACCTCTTCTACGGCCGCTGGAAACTATGTGGCCGGGGCATCGTACTTTAATTATGCCCCAGGAACTGCCAGCGGCATGGCGCCTCGGGCTCACGTGGCCATGTACAAGGCTCTGTGGGACGAGGGTGCCTTATCGTCTGACATAATTGCTGCCATCGAGCAAGCAGTGGTGGACGGTGTGGATGTCTTATCCCTGTCGTTCGGATTGGATGGCGTTGCGCTGTACGAGGACCCTGTTGCCATAGCCACATTCTCAGCCATGGAGAAGGGCGTCTTCGTTTCCACATCGGCAGGAAATGAAGGACCTATCTATGGTAGTTTGCATAATGGAATCCCTTGGGTTCTAACAGTTGCAGCTAGTACCATTGATCGTGACTTTCAAGGAACTGCACATCTTGGAAATGGAGAATCCGTCACAGGGATGACTCTTTTTCCGGGGGTTAATTCGTCTTCAACTCCAATCCCAATTGTTTTCATGAATGCATGTGACAATTTGAAGAAGCTGAACATGGTTGGGAAGAAAATCGTGTTGTGCCAGGACAACAATTCACTTGAGCAACAATACGTTACCGTTCAAGATGCAAATGTTGCCGGAGGTATCTTCATTACCAACAACACCGACTTGGAATTGTTCCTCCAGAGCCAATTTCCCACACTTTTTTTTAGTCCAAAGGAAGGTGAAACTATCAAAGACTACATCAAGAGCAACTCTAACCCGAAAGTAAGCTTGGAGTTTCAAAAGACACTTCTTGGTGTGAGACCAGCACCGACGGTTACTAGTTACACATCTAGAGGTCCATCTTCCAGCTTCCCCTTTACTCTCAAGCCGGACATTACTGCACCGGGTTCACTAATCCTCGCTGCATGGCCTCGAAACATTTCGGTGGCAACGGTTAACAAAAAACAGGTCTTGTTTAGTGAATTCAATTTGTTGTCGGGGACATCCATGGCGTGCCCACATGCAGCTGGGTTAGCTGCGCTTGTGAAAGGTGCACATCCTGAATGGAGTCCTGCAGCTATCAGGTCGGCTATGATGACTACGTCGGACATCCTGGATAACACACTTAGTTCCATTAAGGACATTGGTGATGATTTGCTACCGGCTAGTCCTCTGGCCATGGGAGCAGGTCATGTCAATCCCAACAAGGCCCTTAACCCGGGACTCATATACGACGCGACCATAGATGATTACGTAAATCTTCTTTGTGCACTAAACTACACCAAGGAACAAATCCAAACCATCACCAGATCAGCCTCGAACAATTGTTCATCTCCGTCATTAGATCTTAATTACCCTTCGTTCATTGCATTTTTCAATGTCAATGATTCAAAGTCGGGAGTACAAACCACTCAAGAGTTCCGAAGGACGGTGACCAATGTAGGAAAGGGGCAGTCGACATACATTGCAAGCGTGACAGCTGTGAAAGGGTTTGAGGTTGGAGTCGTTCCCAACAAATTGGTTTTCAGCAGGGAAGGGGAGAAGCTGAGCTTTAAGTTGAGTATAAGAGGTCGAAGACTGATGAAAGAGACGGTGGCTTTTGGTTACCTGACTTGGGTGGACACTGAAGGTCAACATGTGGTGAGAAGCCCCATTGTGGCCACACAACTCAGCTCGGATGTAGTTGTGTCAAATAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

765

Amino Acids

82.26

Weight (kDa)

6.21

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 111	6.5e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	136 - 568	1.1e-43	Subtilase family
fn3_6	PF17766	647 - 751	4.2e-28	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67090
fragaria_vesca	FvH4_1g16180 FvH4_2g34170 FvH4_2g34170 FvH4_2g34230 FvH4_6g01060 FvH4_6g01061
malus_domestica	MD04G1236800.v1.1 MD04G1236900.v1.1 MD08G1098100.v1.1 MD15G1080600.v1.1 MD15G1285300.v1.1
prunus_persica	Prupe.1G433300_v2.0.a1 Prupe.6G168400_v2.0.a1 Prupe.6G356800_v2.0.a1 Prupe.7G131900_v2.0.a1
pyrus_communis	pycom04g21060 pycom04g21070 pycom08g07990 pycom12g23460 pycom15g07490 pycom15g24800
rosa_chinensis	RchiOBHm_Chr2g0105861 RchiOBHm_Chr2g0105881 RchiOBHm_Chr3g0448571 RchiOBHm_Chr6g0308191
rosa_laevigata	RLG00000010660 RLG00000017466 RLG00000017467 RLG00000025886 RLG00000025888 RLG00000025889 RLG00000025890
rosa_multiflora	Rmu_sc0003116.1_g000043 Rmu_sc0004367.1_g000007 Rmu_sc0004367.1_g000008 Rmu_sc0005706.1_g000016 Rmu_sc0010389.1_g000023
rosa_roxburghii	Rroxscaffold_2G00137780 Rroxscaffold_6G00426820 Rroxscaffold_6G00426860 Rroxscaffold_7G00160370 Rroxscaffold_7G00160460
rosa_rugosa	Rorug02G0131300 Rorug02G0131500 Rorug02G0613500 Rorug02G0613600 Rorug06G0364600
rosa_samantha	Rh2CG186700 Rh3DG013500 Rh6DG475800
rosa_wichuraiana	Rw2G014280 Rw2G014290 Rw3G000970 Rw6G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	330, 1772
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	3 cut(s)	413, 736, 782
AccI	GTMKAC	1 cut(s)	2051
AccII	CGCG	1 cut(s)	1832
AciI	CCGC	2 cut(s)	672, 729
AcoI	YGGCCR	7 cut(s)	389, 446, 669, 687, 753, 1770, 2253
AcsI	RAATTY	1 cut(s)	1577
AcuI	CTGAAG	2 cut(s)	294, 2241
AcvI	CACGTG	1 cut(s)	751
AcyI	GRCGYC	2 cut(s)	737, 927
AfiI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 1813, 2023, 2209, 2251
AflIII	ACRYGT	1 cut(s)	2230
AgsI	TTSAA	8 cut(s)	1037, 1110, 1153, 1232, 1394, 1582, 1972, 1986
AhlI	ACTAGT	1 cut(s)	1433
AjnI	CCWGG	4 cut(s)	295, 715, 1191, 1707
AjuI	GAANNNNNNNTTGG	4 cut(s)	596, 628, 1367, 1399
Alw21I	GWGCWC	2 cut(s)	1651, 1867
Alw26I	GTCTC	5 cut(s)	79, 263, 312, 1408, 2177
Alw44I	GTGCAC	2 cut(s)	1647, 1863
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	2 cut(s)	741, 1813
ApaLI	GTGCAC	2 cut(s)	1647, 1863
ApeKI	GCWGC	6 cut(s)	806, 1010, 1517, 1619, 1631, 1670
ApoI	RAATTY	1 cut(s)	1577
ArsI	GACNNNNNNTTYG	2 cut(s)	1548, 1580
Asp700I	GAANNNNTTC	1 cut(s)	1534
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	739, 877, 1636
AspS9I	GGNCC	4 cut(s)	886, 959, 1451, 1804
AsuC2I	CCSGG	6 cut(s)	439, 691, 1092, 1500, 1814, 1815
AsuHPI	GGTGA	7 cut(s)	143, 607, 1346, 1754, 1891, 2038, 2248
AvaI	CYCGRG	2 cut(s)	741, 1813
AvaII	GGWCC	3 cut(s)	886, 959, 1451
BaeGI	GKGCMC	3 cut(s)	1613, 1651, 1867
BalI	TGGCCA	4 cut(s)	448, 755, 1772, 2255
BanI	GGYRCC	3 cut(s)	413, 736, 782
BanII	GRGCYC	1 cut(s)	748
BbrPI	CACGTG	1 cut(s)	751
BbsI	GAAGAC	3 cut(s)	922, 1098, 2176
Bbv12I	GWGCWC	2 cut(s)	1651, 1867
BbvI	GCAGC	6 cut(s)	793, 1022, 1504, 1618, 1631, 1682
BccI	CCATC	7 cut(s)	24, 209, 492, 818, 860, 1462, 1904
BceAI	ACGGC	2 cut(s)	421, 684
BciT130I	CCWGG	4 cut(s)	297, 717, 1193, 1709
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	6 cut(s)	439, 691, 1092, 1500, 1814, 1815
BcoDI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2177
BcuI	ACTAGT	1 cut(s)	1433
BfaI	CTAG	5 cut(s)	1014, 1434, 1446, 1761, 2296
BfmI	CTRYAG	1 cut(s)	1668
BfoI	RGCGCY	1 cut(s)	740
BfuAI	ACCTGC	2 cut(s)	330, 1772
BglII	AGATCT	1 cut(s)	1939
BisI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1518, 1620, 1632, 1671
BlpI	GCTNAGC	1 cut(s)	2141
BlsI	GCNGC	8 cut(s)	673, 731, 808, 1012, 1519, 1621, 1633, 1672
Bme18I	GGWCC	3 cut(s)	886, 959, 1451
BmeT110I	CYCGRG	2 cut(s)	741, 1813
BmgT120I	GGNCC	4 cut(s)	886, 959, 1451, 1804
BmiI	GGNNCC	4 cut(s)	415, 738, 784, 888
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	704, 1225
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	3 cut(s)	922, 1098, 2176
BpmI	CTGGAG	4 cut(s)	61, 279, 296, 1277
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	2141
BpuEI	CTTGAG	3 cut(s)	1229, 1463, 1992
BpuMI	CCSGG	6 cut(s)	439, 691, 1092, 1500, 1814, 1815
BsaAI	YACGTR	2 cut(s)	751, 1849
BsaHI	GRCGYC	2 cut(s)	737, 927
BsaI	GGTCTC	2 cut(s)	312, 1408
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 1813, 2023, 2209, 2251
Bse118I	RCCGGY	3 cut(s)	325, 391, 1756
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	1959, 2058
BseBI	CCWGG	4 cut(s)	297, 717, 1193, 1709
BseGI	GGATG	8 cut(s)	108, 844, 871, 1083, 1598, 1651, 1704, 2278
BseLI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 1813, 2023, 2209, 2251
BseMI	GCAATG	2 cut(s)	1959, 2058
BseMII	CTCAG	4 cut(s)	261, 924, 2132, 2278
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	3 cut(s)	1613, 1651, 1867
BseX3I	CGGCCG	1 cut(s)	669
BseXI	GCAGC	6 cut(s)	793, 1022, 1504, 1618, 1631, 1682
BseYI	CCCAGC	1 cut(s)	1622
BsgI	GTGCAG	2 cut(s)	1029, 1479
Bsh1236I	CGCG	1 cut(s)	1832
Bsh1285I	CGRYCG	1 cut(s)	672
BshNI	GGYRCC	3 cut(s)	413, 736, 782
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	1651, 1867
BsiHKCI	CYCGRG	2 cut(s)	741, 1813
BslFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1609, 1830
BslI	CCNNNNNNNGG	9 cut(s)	297, 444, 968, 1074, 1331, 1813, 2023, 2209, 2251
BsmAI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2177
BsmBI	CGTCTC	1 cut(s)	2177
BsmFI	GGGAC	6 cut(s)	337, 647, 664, 788, 1609, 1830
BsmI	GAATGC	1 cut(s)	1141
Bso31I	GGTCTC	2 cut(s)	312, 1408
BsoBI	CYCGRG	2 cut(s)	741, 1813
Bsp1286I	GDGCHC	4 cut(s)	748, 1613, 1651, 1867
Bsp1407I	TGTACA	2 cut(s)	175, 759
Bsp143I	GATC	4 cut(s)	148, 1024, 1904, 1939
Bsp1720I	GCTNAGC	1 cut(s)	2141
Bsp19I	CCATGG	3 cut(s)	915, 1602, 1773
BspACI	CCGC	2 cut(s)	672, 729
BspCNI	CTCAG	4 cut(s)	262, 923, 2133, 2277
BspFNI	CGCG	1 cut(s)	1832
BspHI	TCATGA	2 cut(s)	88, 1131
BspLI	GGNNCC	4 cut(s)	415, 738, 784, 888
BspMAI	CTGCAG	1 cut(s)	1672
BspMI	ACCTGC	2 cut(s)	330, 1772
BspQI	GCTCTTC	1 cut(s)	541
BspT107I	GGYRCC	3 cut(s)	413, 736, 782
BspTNI	GGTCTC	2 cut(s)	312, 1408
BsrDI	GCAATG	2 cut(s)	1959, 2058
BsrFI	RCCGGY	3 cut(s)	325, 391, 1756
BsrGI	TGTACA	2 cut(s)	175, 759
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	3 cut(s)	325, 391, 1756
BssMI	GATC	4 cut(s)	148, 1024, 1904, 1939
BssNI	GRCGYC	2 cut(s)	737, 927
BssT1I	CCWWGG	5 cut(s)	915, 992, 1602, 1773, 1878
Bst2UI	CCWGG	4 cut(s)	297, 717, 1193, 1709
Bst4CI	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2026, 2188
Bst6I	CTCTTC	3 cut(s)	211, 541, 667
BstACI	GRCGYC	2 cut(s)	737, 927
BstAPI	GCANNNNNTGC	1 cut(s)	1244
BstAUI	TGTACA	2 cut(s)	175, 759
BstBAI	YACGTR	2 cut(s)	751, 1849
BstC8I	GCNNGC	4 cut(s)	727, 819, 1609, 2065
BstDEI	CTNAG	6 cut(s)	210, 270, 910, 1721, 2141, 2264
BstDSI	CCRYGG	3 cut(s)	915, 1602, 1773
BstEII	GGTNACC	2 cut(s)	2026, 2198
BstF5I	GGATG	8 cut(s)	108, 844, 871, 1083, 1598, 1651, 1704, 2278
BstFNI	CGCG	1 cut(s)	1832
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	3 cut(s)	739, 877, 1636
BstKTI	GATC	4 cut(s)	151, 1027, 1907, 1942
BstMAI	GTCTC	5 cut(s)	79, 263, 312, 1408, 2177
BstMBI	GATC	4 cut(s)	148, 1024, 1904, 1939
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1628, 1778
BstNI	CCWGG	4 cut(s)	297, 717, 1193, 1709
BstNSI	RCATGY	3 cut(s)	1143, 1619, 2234
BstPI	GGTNACC	2 cut(s)	2026, 2198
BstSFI	CTRYAG	1 cut(s)	1668
BstSLI	GKGCMC	3 cut(s)	1613, 1651, 1867
BstSNI	TACGTA	1 cut(s)	1849
BstUI	CGCG	1 cut(s)	1832
BstV1I	GCAGC	6 cut(s)	793, 1022, 1504, 1618, 1631, 1682
BstV2I	GAAGAC	3 cut(s)	922, 1098, 2176
BstX2I	RGATCY	1 cut(s)	1939
BstXI	CCANNNNNNTGG	4 cut(s)	362, 498, 733, 2113
BstYI	RGATCY	1 cut(s)	1939
BstZI	CGGCCG	1 cut(s)	669
BtgI	CCRYGG	3 cut(s)	915, 1602, 1773
BtsCI	GGATG	8 cut(s)	108, 844, 871, 1083, 1598, 1651, 1704, 2278
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	4 cut(s)	171, 256, 828, 2217
BveI	ACCTGC	2 cut(s)	330, 1772
Cac8I	GCNNGC	4 cut(s)	727, 819, 1609, 2065
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	2 cut(s)	88, 1131
CfoI	GCGC	3 cut(s)	739, 877, 1636
Cfr10I	RCCGGY	3 cut(s)	325, 391, 1756
Cfr13I	GGNCC	4 cut(s)	886, 959, 1451, 1804
Cfr9I	CCCGGG	1 cut(s)	1813
CseI	GACGC	4 cut(s)	479, 661, 916, 1838
DdeI	CTNAG	6 cut(s)	210, 270, 910, 1721, 2141, 2264
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	4 cut(s)	150, 1026, 1906, 1941
DpnII	GATC	4 cut(s)	148, 1024, 1904, 1939
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	7 cut(s)	389, 446, 669, 687, 753, 1770, 2253
EagI	CGGCCG	1 cut(s)	669
Eam1104I	CTCTTC	3 cut(s)	211, 541, 667
EarI	CTCTTC	3 cut(s)	211, 541, 667
EclXI	CGGCCG	1 cut(s)	669
Eco105I	TACGTA	1 cut(s)	1849
Eco130I	CCWWGG	5 cut(s)	915, 992, 1602, 1773, 1878
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	2 cut(s)	312, 1408
Eco47I	GGWCC	3 cut(s)	886, 959, 1451
Eco52I	CGGCCG	1 cut(s)	669
Eco57I	CTGAAG	2 cut(s)	294, 2241
Eco72I	CACGTG	1 cut(s)	751
Eco88I	CYCGRG	2 cut(s)	741, 1813
Eco91I	GGTNACC	2 cut(s)	2026, 2198
EcoO109I	RGGNCCY	3 cut(s)	886, 959, 1804
EcoO65I	GGTNACC	2 cut(s)	2026, 2198
EcoRI	GAATTC	1 cut(s)	1577
EcoRII	CCWGG	4 cut(s)	295, 715, 1191, 1707
EcoT14I	CCWWGG	5 cut(s)	915, 992, 1602, 1773, 1878
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	748
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	5 cut(s)	915, 992, 1602, 1773, 1878
Esp3I	CGTCTC	1 cut(s)	2177
FalI	AAGNNNNNCTT	4 cut(s)	914, 946, 2129, 2161
FaqI	GGGAC	6 cut(s)	337, 647, 664, 788, 1609, 1830
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	2051
Fnu4HI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1518, 1620, 1632, 1671
FokI	GGATG	8 cut(s)	95, 851, 878, 1090, 1585, 1638, 1691, 2285
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1518, 1620, 1632, 1671
FspBI	CTAG	5 cut(s)	1014, 1434, 1446, 1761, 2296
GlaI	GCGC	3 cut(s)	738, 876, 1635
GluI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1518, 1620, 1632, 1671
GsaI	CCCAGC	1 cut(s)	1626
GsuI	CTGGAG	4 cut(s)	61, 279, 296, 1277
HaeII	RGCGCY	1 cut(s)	740
HgaI	GACGC	4 cut(s)	479, 661, 916, 1838
HhaI	GCGC	3 cut(s)	739, 877, 1636
Hin1I	GRCGYC	2 cut(s)	737, 927
Hin6I	GCGC	3 cut(s)	737, 875, 1634
HinP1I	GCGC	3 cut(s)	737, 875, 1634
HincII	GTYRAC	3 cut(s)	1552, 2052, 2228
HindII	GTYRAC	3 cut(s)	1552, 2052, 2228
HindIII	AAGCTT	2 cut(s)	460, 1381
HpaI	GTTAAC	1 cut(s)	1552
HphI	GGTGA	7 cut(s)	143, 607, 1346, 1754, 1891, 2038, 2248
Hpy188I	TCNGA	6 cut(s)	484, 796, 860, 1702, 2018, 2272
Hpy99I	CGWCG	5 cut(s)	473, 644, 1429, 1702, 1832
HpyAV	CCTTC	7 cut(s)	916, 950, 1325, 1962, 2013, 2123, 2216
HpyCH4III	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2026, 2188
HpyCH4IV	ACGT	5 cut(s)	334, 750, 1221, 1697, 1848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1628, 1778
HpyF3I	CTNAG	6 cut(s)	210, 270, 910, 1721, 2141, 2264
HpySE526I	ACGT	5 cut(s)	334, 750, 1221, 1697, 1848
Hsp92I	GRCGYC	2 cut(s)	737, 927
HspAI	GCGC	3 cut(s)	737, 875, 1634
KasI	GGCGCC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	1552
Kzo9I	GATC	4 cut(s)	148, 1024, 1904, 1939
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	2 cut(s)	383, 1778
Lsp1109I	GCAGC	6 cut(s)	793, 1022, 1504, 1618, 1631, 1682
LweI	GCATC	2 cut(s)	704, 1225
MaeI	CTAG	5 cut(s)	1014, 1434, 1446, 1761, 2296
MaeII	ACGT	5 cut(s)	334, 750, 1221, 1697, 1848
MalI	GATC	4 cut(s)	150, 1026, 1906, 1941
MboI	GATC	4 cut(s)	148, 1024, 1904, 1939
MfeI	CAATTG	2 cut(s)	1122, 1918
MflI	RGATCY	1 cut(s)	1939
MhlI	GDGCHC	4 cut(s)	748, 1613, 1651, 1867
MlsI	TGGCCA	4 cut(s)	448, 755, 1772, 2255
MluNI	TGGCCA	4 cut(s)	448, 755, 1772, 2255
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	4 cut(s)	1075, 1672, 1812, 2106
MmeI	TCCRAC	3 cut(s)	120, 1680, 2074
Mox20I	TGGCCA	4 cut(s)	448, 755, 1772, 2255
Mph1103I	ATGCAT	1 cut(s)	1141
MroXI	GAANNNNTTC	1 cut(s)	1534
MscI	TGGCCA	4 cut(s)	448, 755, 1772, 2255
MslI	CAYNNNNRTG	4 cut(s)	113, 496, 1076, 1538
Msp20I	TGGCCA	4 cut(s)	448, 755, 1772, 2255
MspA1I	CMGCKG	4 cut(s)	674, 729, 1622, 2075
MunI	CAATTG	2 cut(s)	1122, 1918
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	4 cut(s)	297, 717, 1193, 1709
MvnI	CGCG	1 cut(s)	1832
MwoI	GCNNNNNNNGC	5 cut(s)	743, 752, 1244, 1628, 1778
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	6 cut(s)	439, 691, 1092, 1500, 1814, 1815
NcoI	CCATGG	3 cut(s)	915, 1602, 1773
NdeII	GATC	4 cut(s)	148, 1024, 1904, 1939
NlaIV	GGNNCC	4 cut(s)	415, 738, 784, 888
NmuCI	GTSAC	9 cut(s)	49, 335, 596, 607, 1028, 1069, 1142, 2026, 2068
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	3 cut(s)	1143, 1619, 2234
PagI	TCATGA	2 cut(s)	88, 1131
PceI	AGGCCT	1 cut(s)	281
PciI	ACATGT	1 cut(s)	2230
PciSI	GCTCTTC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	1534
PfeI	GAWTC	6 cut(s)	92, 119, 585, 987, 1064, 1982
PflFI	GACNNNGTC	1 cut(s)	1696
PfoI	TCCNGGA	1 cut(s)	1707
PkrI	GCNGC	8 cut(s)	673, 731, 808, 1012, 1519, 1621, 1633, 1672
PleI	GAGTC	4 cut(s)	1075, 1671, 1812, 2105
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	751
PmlI	CACGTG	1 cut(s)	751
PpsI	GAGTC	4 cut(s)	1075, 1671, 1812, 2105
Ppu21I	YACGTR	2 cut(s)	751, 1849
PpuMI	RGGWCCY	2 cut(s)	886, 959
PscI	ACATGT	1 cut(s)	2230
Psp5II	RGGWCCY	2 cut(s)	886, 959
Psp6I	CCWGG	4 cut(s)	295, 715, 1191, 1707
PspCI	CACGTG	1 cut(s)	751
PspEI	GGTNACC	2 cut(s)	2026, 2198
PspFI	CCCAGC	1 cut(s)	1622
PspGI	CCWGG	4 cut(s)	295, 715, 1191, 1707
PspN4I	GGNNCC	4 cut(s)	415, 738, 784, 888
PspPI	GGNCC	4 cut(s)	886, 959, 1451, 1804
PspPPI	RGGWCCY	2 cut(s)	886, 959
PstI	CTGCAG	1 cut(s)	1672
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	1939
PsyI	GACNNNGTC	1 cut(s)	1696
PvuII	CAGCTG	2 cut(s)	1622, 2075
RseI	CAYNNNNRTG	4 cut(s)	113, 496, 1076, 1538
SalI	GTCGAC	1 cut(s)	2050
SapI	GCTCTTC	1 cut(s)	541
SatI	GCNGC	8 cut(s)	672, 730, 807, 1011, 1518, 1620, 1632, 1671
Sau3AI	GATC	4 cut(s)	148, 1024, 1904, 1939
Sau96I	GGNCC	4 cut(s)	886, 959, 1451, 1804
SchI	GAGTC	4 cut(s)	1075, 1672, 1812, 2106
SduI	GDGCHC	4 cut(s)	748, 1613, 1651, 1867
SfaNI	GCATC	2 cut(s)	704, 1225
SfcI	CTRYAG	1 cut(s)	1668
SfoI	GGCGCC	1 cut(s)	738
SinI	GGWCC	3 cut(s)	886, 959, 1451
SmaI	CCCGGG	1 cut(s)	1815
SmiMI	CAYNNNNRTG	4 cut(s)	113, 496, 1076, 1538
SmlI	CTYRAG	3 cut(s)	1208, 1478, 2007
SmoI	CTYRAG	3 cut(s)	1208, 1478, 2007
SnaBI	TACGTA	1 cut(s)	1849
SpeI	ACTAGT	1 cut(s)	1433
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	2 cut(s)	672, 729
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	5 cut(s)	1014, 1434, 1446, 1761, 2296
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	5 cut(s)	915, 992, 1602, 1773, 1878
TaaI	ACNGT	9 cut(s)	175, 644, 833, 1006, 1228, 1429, 1549, 2026, 2188
TaiI	ACGT	5 cut(s)	337, 753, 1224, 1700, 1851
TaqI	TCGA	6 cut(s)	639, 813, 1528, 1913, 2051, 2167
TatI	WGTACW	5 cut(s)	30, 175, 184, 759, 1996
TauI	GCSGC	2 cut(s)	674, 732
TfiI	GAWTC	6 cut(s)	92, 119, 585, 987, 1064, 1982
TscAI	CASTG	4 cut(s)	178, 256, 828, 2224
TseFI	GTSAC	9 cut(s)	49, 335, 596, 607, 1028, 1069, 1142, 2026, 2068
TseI	GCWGC	6 cut(s)	806, 1010, 1517, 1619, 1631, 1670
Tsp45I	GTSAC	9 cut(s)	49, 335, 596, 607, 1028, 1069, 1142, 2026, 2068
TspGWI	ACGGA	2 cut(s)	1057, 1920
TspMI	CCCGGG	1 cut(s)	1813
TspRI	CASTG	4 cut(s)	178, 256, 828, 2224
Tth111I	GACNNNGTC	1 cut(s)	1696
VneI	GTGCAC	2 cut(s)	1647, 1863
VpaK11BI	GGWCC	3 cut(s)	886, 959, 1451
XapI	RAATTY	1 cut(s)	1577
XbaI	TCTAGA	1 cut(s)	1445
XceI	RCATGY	3 cut(s)	1143, 1619, 2234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmaI	CCCGGG	1 cut(s)	1813
XmiI	GTMKAC	1 cut(s)	2051
XmnI	GAANNNNTTC	1 cut(s)	1534
XspI	CTAG	5 cut(s)	1014, 1434, 1446, 1761, 2296
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.