Prupe.8G049100_v2.0.a1

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001404
Physical Location & Seq
Forward (+)
5359605 .. 5366343
6739 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G049100.1

Sequence Viewer

Length: 1170 bp
ATGACCAATCCAGTTCAGGATTTTCATGAAGAAGAAGAAGATGACCAGGGCGAGGTTTATCTTGATGAAGCTGACATTATTGGCGAAGTCGATGTTGATGATGAAGATCTTCCTGATGCAGATGATGAAATTATTGATGAGCCTGATGACTCCATGCACATATTCACTGGTCATACTGGTGAGCTTTACACGGTTGTCTGCAGCCCAACAGATCCTACATTAGTTGCAACTGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAAATTGGACAAGGAGATTGGGCGTTTGAGCTCCAAGGTCATAAGGATTCTGTTTCTAGTTTAGCATTTAGTACTGATGGACAATTGCTTGCATCCGGAAGCTTGGATGGAATTATTCAAATTTGGGATATCACATCACAAAATCTGAAATGCACTCTTGAAGGTCCTGGGGGGGGCATTGAGTGGGTCAGGTGGCATCCTAGGGGGCATCTGGTCCTGGCTGGTACAGAGGACTCTATTGTTTGGATGTGGAATGCTGACAAAGGTTCCTATCTTAATTCGTTTTCAGGCCATGGTGGTAGCGTGAGTTGTGGTGATTTTACCCCCGATGGTAAAACAATATGCACTGGTTCTGCTGATGCAACTTTGAGAATATGGAATCCAAAAAGTGGCGAAAACATTCATGTGGTACAAGGTCACCCATACCATACTGCAGGATTGACATGTTTGGCAATAAGCTCTGATTCAACTCTAGCTGTTACTGGTTGTGAAGATGGTTCTATCCATGTTGTCAACATAGTAACTGGAAAGGTTGTTAGTTCCCTGCCTTCACATTCAGATTCTGTCGAATGTATCGAGCTTGCCCCAAGCTTCCCGTGGGCTGCAATAGGAAGTATGGATAACAAGCTAATCATCTGGGATTTGCAGCATTCGTTGGCCCGCTCCACATGTGATCATGAGGATGGAGTGACATGCTTGACATGGCTTGGTGGATCGAGGTACCTAGCAACGGGTTGCGGGGATGGGAAGGTTCGACTGTGGGATAGTCTCTCGGGTGATTGTGTAAGAATCTTCAATGGGCACAGTGAATCTATTCAGTCTCTCTCTGTTTCTGCCAACCAAGAGTTTCTTGTTTCAGTATCTACTGATGGAACTGCCCGAGTTTTTGAGATTGCAGAATATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

390

Amino Acids

41.82

Weight (kDa)

4.27

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 981
AccB1I GGYRCC 1 cut(s) 981
AccB7I CCANNNNNTGG 1 cut(s) 650
AccBSI CCGCTC 1 cut(s) 924
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 922, 999
AclWI GGATC 2 cut(s) 206, 982
AcsI RAATTY 1 cut(s) 381
AfaI GTAC 4 cut(s) 334, 487, 672, 983
AfiI CCNNNNNNNGG 4 cut(s) 52, 434, 650, 991
AflIII ACRYGT 2 cut(s) 704, 929
AgsI TTSAA 4 cut(s) 380, 422, 729, 1057
AjnI CCWGG 3 cut(s) 45, 427, 477
AluBI AGCT 9 cut(s) 71, 184, 292, 363, 720, 737, 841, 852, 889
AluI AGCT 9 cut(s) 71, 184, 292, 363, 720, 737, 841, 852, 889
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 1034, 1086
AlwI GGATC 2 cut(s) 206, 982
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 2 cut(s) 1033, 1140
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 550, 918
ApeKI GCWGC 3 cut(s) 201, 863, 907
ApoI RAATTY 1 cut(s) 381
Asp700I GAANNNNTTC 3 cut(s) 108, 660, 1074
Asp718I GGTACC 1 cut(s) 981
AspA2I CCTAGG 1 cut(s) 461
AspS9I GGNCC 3 cut(s) 425, 475, 919
AsuHPI GGTGA 4 cut(s) 191, 587, 671, 1049
AvaI CYCGRG 2 cut(s) 1033, 1140
AvaII GGWCC 2 cut(s) 425, 475
AvrII CCTAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 1065
BanI GGYRCC 1 cut(s) 981
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 213, 850, 919
BccI CCATC 7 cut(s) 332, 362, 584, 749, 938, 998, 1124
BciT130I CCWGG 3 cut(s) 47, 429, 479
BclI TGATCA 1 cut(s) 934
BcoDI GTCTC 2 cut(s) 1034, 1086
BfaI CTAG 4 cut(s) 318, 462, 734, 986
BfmI CTRYAG 2 cut(s) 199, 693
BglII AGATCT 1 cut(s) 106
BisI GCNGC 3 cut(s) 202, 864, 908
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 3 cut(s) 203, 865, 909
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 3 cut(s) 47, 429, 479
Bme18I GGWCC 2 cut(s) 425, 475
BmeT110I CYCGRG 2 cut(s) 1033, 1140
BmgT120I GGNCC 3 cut(s) 425, 475, 919
BmiI GGNNCC 2 cut(s) 529, 983
BmrFI CCNGG 3 cut(s) 47, 429, 479
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 5 cut(s) 106, 362, 466, 478, 610
BmuI ACTGGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 6 cut(s) 46, 295, 428, 461, 553, 857
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 434, 650, 991
Bse1I ACTGG 7 cut(s) 11, 172, 181, 235, 613, 748, 790
Bse8I GATNNNNATC 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 3 cut(s) 47, 429, 479
BseDI CCNNGG 6 cut(s) 46, 295, 428, 461, 553, 857
BseGI GGATG 6 cut(s) 353, 373, 457, 513, 949, 1009
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 52, 434, 650, 991
BseNI ACTGG 7 cut(s) 11, 172, 181, 235, 613, 748, 790
BseSI GKGCMC 1 cut(s) 1065
BseXI GCAGC 3 cut(s) 213, 850, 919
BshFI GGCC 2 cut(s) 552, 920
BshNI GGYRCC 1 cut(s) 981
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 2 cut(s) 1033, 1140
BsiSI CCGG 1 cut(s) 357
BslI CCNNNNNNNGG 4 cut(s) 52, 434, 650, 991
BsmAI GTCTC 2 cut(s) 1034, 1086
BsmI GAATGC 2 cut(s) 520, 910
BsnI GGCC 2 cut(s) 552, 920
BsoBI CYCGRG 2 cut(s) 1033, 1140
Bsp1286I GDGCHC 2 cut(s) 294, 1065
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 4 cut(s) 106, 211, 934, 974
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 2 cut(s) 922, 999
BspANI GGCC 2 cut(s) 552, 920
BspEI TCCGGA 1 cut(s) 356
BspHI TCATGA 2 cut(s) 25, 937
BspLI GGNNCC 2 cut(s) 529, 983
BspMAI CTGCAG 2 cut(s) 203, 697
BspPI GGATC 2 cut(s) 206, 982
BspT107I GGYRCC 1 cut(s) 981
BsrBI CCGCTC 1 cut(s) 924
BsrI ACTGG 7 cut(s) 11, 172, 181, 235, 613, 748, 790
BssECI CCNNGG 6 cut(s) 46, 295, 428, 461, 553, 857
BssMI GATC 4 cut(s) 106, 211, 934, 974
BssT1I CCWWGG 3 cut(s) 295, 461, 553
Bst2UI CCWGG 3 cut(s) 47, 429, 479
Bst4CI ACNGT 3 cut(s) 193, 1020, 1067
BstC8I GCNNGC 3 cut(s) 351, 843, 922
BstDSI CCRYGG 2 cut(s) 553, 857
BstEII GGTNACC 1 cut(s) 677
BstF5I GGATG 6 cut(s) 353, 373, 457, 513, 949, 1009
BstKTI GATC 4 cut(s) 109, 214, 937, 977
BstMAI GTCTC 2 cut(s) 1034, 1086
BstMBI GATC 4 cut(s) 106, 211, 934, 974
BstNI CCWGG 3 cut(s) 47, 429, 479
BstNSI RCATGY 3 cut(s) 708, 933, 957
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 45, 427, 477
BstSFI CTRYAG 2 cut(s) 199, 693
BstSLI GKGCMC 1 cut(s) 1065
BstV1I GCAGC 3 cut(s) 213, 850, 919
BstX2I RGATCY 2 cut(s) 106, 211
BstYI RGATCY 2 cut(s) 106, 211
BsuRI GGCC 2 cut(s) 552, 920
BtgI CCRYGG 2 cut(s) 553, 857
BtsCI GGATG 6 cut(s) 353, 373, 457, 513, 949, 1009
BtsIMutI CAGTG 3 cut(s) 165, 606, 1072
Cac8I GCNNGC 3 cut(s) 351, 843, 922
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 2 cut(s) 25, 937
Cfr13I GGNCC 3 cut(s) 425, 475, 919
Csp6I GTAC 4 cut(s) 333, 486, 671, 982
CviQI GTAC 4 cut(s) 333, 486, 671, 982
DpnI GATC 4 cut(s) 108, 213, 936, 976
DpnII GATC 4 cut(s) 106, 211, 934, 974
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 295, 461, 553
Eco24I GRGCYC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 425, 475
Eco53kI GAGCTC 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 1033, 1140
Eco91I GGTNACC 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 45, 427, 477
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 295, 461, 553
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 3 cut(s) 295, 461, 553
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FauI CCCGC 2 cut(s) 929, 992
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 3 cut(s) 202, 864, 908
FokI GGATG 6 cut(s) 340, 380, 444, 520, 956, 1016
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 202, 864, 908
FspBI CTAG 4 cut(s) 318, 462, 734, 986
GluI GCNGC 3 cut(s) 202, 864, 908
HaeIII GGCC 2 cut(s) 552, 920
HapII CCGG 1 cut(s) 357
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 2 cut(s) 361, 850
HinfI GANTC 8 cut(s) 149, 308, 494, 640, 725, 821, 1050, 1070
HpaII CCGG 1 cut(s) 357
HphI GGTGA 4 cut(s) 191, 587, 671, 1049
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 3 cut(s) 408, 724, 820
Hpy188III TCNNGA 7 cut(s) 17, 26, 62, 113, 357, 419, 938
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 3 cut(s) 416, 819, 1003
HpyCH4III ACNGT 3 cut(s) 193, 1020, 1067
Kpn2I TCCGGA 1 cut(s) 356
KpnI GGTACC 1 cut(s) 985
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 4 cut(s) 106, 211, 934, 974
LmnI GCTCC 2 cut(s) 297, 929
Lsp1109I GCAGC 3 cut(s) 213, 850, 919
LweI GCATC 5 cut(s) 106, 362, 466, 478, 610
MaeI CTAG 4 cut(s) 318, 462, 734, 986
MaeIII GTNAC 4 cut(s) 677, 739, 781, 949
MalI GATC 4 cut(s) 108, 213, 936, 976
MbiI CCGCTC 1 cut(s) 924
MboI GATC 4 cut(s) 106, 211, 934, 974
MboII GAAGA 8 cut(s) 41, 44, 47, 50, 101, 116, 764, 1045
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 2 cut(s) 106, 211
MhlI GDGCHC 2 cut(s) 294, 1065
MluCI AATT 6 cut(s) 129, 264, 344, 372, 381, 538
MlyI GAGTC 2 cut(s) 143, 488
MnlI CCTC 5 cut(s) 46, 242, 484, 934, 972
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 3 cut(s) 108, 660, 1074
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 3 cut(s) 177, 665, 942
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 3 cut(s) 47, 429, 479
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 2 cut(s) 520, 910
MvaI CCWGG 3 cut(s) 47, 429, 479
NcoI CCATGG 1 cut(s) 553
NdeII GATC 4 cut(s) 106, 211, 934, 974
NlaIV GGNNCC 2 cut(s) 529, 983
NmuCI GTSAC 2 cut(s) 677, 949
NspI RCATGY 3 cut(s) 708, 933, 957
PagI TCATGA 2 cut(s) 25, 937
PciI ACATGT 2 cut(s) 704, 929
PcsI WCGNNNNNNNCGW 1 cut(s) 834
PctI GAATGC 2 cut(s) 520, 910
PdmI GAANNNNTTC 3 cut(s) 108, 660, 1074
PfeI GAWTC 6 cut(s) 308, 640, 725, 821, 1050, 1070
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 3 cut(s) 203, 865, 909
PleI GAGTC 2 cut(s) 143, 488
PpsI GAGTC 2 cut(s) 143, 488
PpuMI RGGWCCY 1 cut(s) 425
PscI ACATGT 2 cut(s) 704, 929
Psp124BI GAGCTC 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 3 cut(s) 45, 427, 477
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 3 cut(s) 45, 427, 477
PspN4I GGNNCC 2 cut(s) 529, 983
PspPI GGNCC 3 cut(s) 425, 475, 919
PspPPI RGGWCCY 1 cut(s) 425
PstI CTGCAG 2 cut(s) 203, 697
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 2 cut(s) 106, 211
RsaI GTAC 4 cut(s) 334, 487, 672, 983
RsaNI GTAC 4 cut(s) 333, 486, 671, 982
RseI CAYNNNNRTG 3 cut(s) 177, 665, 942
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 202, 864, 908
Sau3AI GATC 4 cut(s) 106, 211, 934, 974
Sau96I GGNCC 3 cut(s) 425, 475, 919
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 2 cut(s) 143, 488
ScrFI CCNGG 3 cut(s) 47, 429, 479
SduI GDGCHC 2 cut(s) 294, 1065
SfaNI GCATC 5 cut(s) 106, 362, 466, 478, 610
SfcI CTRYAG 2 cut(s) 199, 693
SinI GGWCC 2 cut(s) 425, 475
SmiMI CAYNNNNRTG 3 cut(s) 177, 665, 942
Sse9I AATT 6 cut(s) 129, 264, 344, 372, 381, 538
SsiI CCGC 2 cut(s) 922, 999
SspMI CTAG 4 cut(s) 318, 462, 734, 986
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 3 cut(s) 45, 427, 477
StyI CCWWGG 3 cut(s) 295, 461, 553
TaaI ACNGT 3 cut(s) 193, 1020, 1067
TaqI TCGA 5 cut(s) 90, 828, 837, 977, 1015
TasI AATT 6 cut(s) 129, 264, 344, 372, 381, 538
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 6 cut(s) 308, 640, 725, 821, 1050, 1070
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 172, 613, 1072
TseFI GTSAC 2 cut(s) 677, 949
TseI GCWGC 3 cut(s) 201, 863, 907
Tsp45I GTSAC 2 cut(s) 677, 949
TspDTI ATGAA 6 cut(s) 14, 42, 81, 117, 141, 653
TspRI CASTG 3 cut(s) 172, 613, 1072
Van91I CCANNNNNTGG 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 425, 475
XapI RAATTY 1 cut(s) 381
XceI RCATGY 3 cut(s) 708, 933, 957
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XmaJI CCTAGG 1 cut(s) 461
XmnI GAANNNNTTC 3 cut(s) 108, 660, 1074
XspI CTAG 4 cut(s) 318, 462, 734, 986
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.