Rh6CG158700

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001404
Physical Location & Seq
Forward (+)
20590588 .. 20592439
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG158700.1

Sequence Viewer

Length: 450 bp
ATGACGGTTATGAAGCCTGGAGTGATTGCCTTGTTTGATGTTGATGGGACTCTCACTGCTCCCAGAAAGGTCCGATCTGACATCCTTAACAAAGTCGATTTCGATGAGGAAGATCTTCCTGATGCAGATGACCAAGTTGTTGATGGGCCTGATGATTCCATGCATACTTTTACTGGTCATACGGGTGAACTTTATACAGTTGTCTGCAGTCCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGGTCCAAGGCCATAAGGATTCTGTTTCAAGTTTAACATTTAGTACTGATGGACAGTTGCTTGCATCTGGAAGCTTGGATGGAATTATTCAAATTTGGGATATATCAGCAAATCTAAAATTTATTACTGTTGAAGGTCCTGGAGGGGGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

149

Amino Acids

15.81

Weight (kDa)

4.17

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 52 - 142 1.4e-15 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 53 - 135 3.9e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 54 - 142 2.8e-14 WDR3 first beta-propeller domain
Beta-prop_SCAP PF24017 54 - 142 3.3e-09 SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 54 - 136 1e-05 WDR36/Utp21 first beta-propeller
Beta-prop_TEP1_2nd PF25047 55 - 140 9.8e-07 TEP-1 second beta-propeller
WD40_Gbeta PF25391 56 - 137 1.9e-08 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 56 - 132 9.5e-06 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 62 - 136 8.4e-09 WDHD1 first WD40 domain
NBCH_WD40 PF20426 63 - 134 2.3e-07 Neurobeachin beta propeller domain
Beta-prop_WDR3_2nd PF25172 71 - 144 2.9e-06 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 72 - 141 1.4e-10 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 98 - 137 6e-07 CDC20/Fizzy WD40 domain
WD40 PF00400 100 - 132 2.1e-10 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 2 cut(s) 387, 413
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 3 cut(s) 324, 386, 428
AjnI CCWGG 2 cut(s) 16, 433
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 146, 304
ApoI RAATTY 2 cut(s) 387, 413
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 4 cut(s) 70, 146, 298, 431
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 3 cut(s) 70, 298, 431
BccI CCATC 4 cut(s) 38, 137, 338, 368
BciT130I CCWGG 2 cut(s) 18, 435
BfmI CTRYAG 1 cut(s) 205
BglII AGATCT 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 18, 435
Bme18I GGWCC 3 cut(s) 70, 298, 431
BmgT120I GGNCC 4 cut(s) 70, 146, 298, 431
BmrFI CCNGG 2 cut(s) 18, 435
BmsI GCATC 2 cut(s) 112, 368
BpmI CTGGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 178, 221
BseBI CCWGG 2 cut(s) 18, 435
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 81, 379
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 178, 221
BshFI GGCC 2 cut(s) 148, 306
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 2 cut(s) 148, 306
Bsp143I GATC 3 cut(s) 74, 112, 217
BspANI GGCC 2 cut(s) 148, 306
BspCNI CTCAG 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 178, 221
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 74, 112, 217
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 18, 435
Bst4CI ACNGT 4 cut(s) 7, 199, 351, 424
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 81, 379
BstKTI GATC 3 cut(s) 77, 115, 220
BstMBI GATC 3 cut(s) 74, 112, 217
BstNI CCWGG 2 cut(s) 18, 435
BstSCI CCNGG 2 cut(s) 16, 433
BstSFI CTRYAG 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 112, 217
BstYI RGATCY 2 cut(s) 112, 217
BsuRI GGCC 2 cut(s) 148, 306
BtsCI GGATG 2 cut(s) 81, 379
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 228
Cac8I GCNNGC 1 cut(s) 357
Cfr13I GGNCC 4 cut(s) 70, 146, 298, 431
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 160
CviJI RGCY 5 cut(s) 16, 148, 290, 306, 369
CviKI_1 RGCY 5 cut(s) 16, 148, 290, 306, 369
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 76, 114, 219
DpnII GATC 3 cut(s) 74, 112, 217
Eco130I CCWWGG 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 70, 298, 431
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 16, 433
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 163
FaiI YATR 7 cut(s) 11, 161, 165, 180, 195, 309, 398
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 159
FokI GGATG 2 cut(s) 68, 386
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 148, 306
Hin1II CATG 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 3 cut(s) 49, 155, 314
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 4 cut(s) 74, 79, 213, 295
Hpy188III TCNNGA 2 cut(s) 119, 363
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 4 cut(s) 7, 199, 351, 424
HpyCH4V TGCA 5 cut(s) 125, 163, 207, 233, 359
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 3 cut(s) 74, 112, 217
LmnI GCTCC 1 cut(s) 64
LweI GCATC 2 cut(s) 112, 368
MalI GATC 3 cut(s) 76, 114, 219
MboI GATC 3 cut(s) 74, 112, 217
MboII GAAGA 3 cut(s) 107, 122, 280
MflI RGATCY 2 cut(s) 112, 217
MluCI AATT 3 cut(s) 378, 387, 413
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 100, 248, 289, 431
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 87, 329
MslI CAYNNNNRTG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 18, 435
MvaI CCWGG 2 cut(s) 18, 435
NdeII GATC 3 cut(s) 74, 112, 217
NlaIII CATG 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 155, 314
PfoI TCCNGGA 1 cut(s) 433
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 16, 433
PspGI CCWGG 2 cut(s) 16, 433
PspPI GGNCC 4 cut(s) 70, 146, 298, 431
PspPPI RGGWCCY 1 cut(s) 431
PstI CTGCAG 1 cut(s) 209
PsuI RGATCY 2 cut(s) 112, 217
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 2 cut(s) 87, 329
Sau3AI GATC 3 cut(s) 74, 112, 217
Sau96I GGNCC 4 cut(s) 70, 146, 298, 431
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 18, 435
SetI ASST 4 cut(s) 72, 300, 371, 433
SfaNI GCATC 2 cut(s) 112, 368
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 3 cut(s) 70, 298, 431
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 3 cut(s) 378, 387, 413
StyD4I CCNGG 2 cut(s) 16, 433
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 4 cut(s) 7, 199, 351, 424
TaqI TCGA 2 cut(s) 96, 102
TasI AATT 3 cut(s) 378, 387, 413
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 155, 314
Tru1I TTAA 2 cut(s) 87, 329
Tru9I TTAA 2 cut(s) 87, 329
TscAI CASTG 2 cut(s) 61, 228
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 2 cut(s) 61, 228
VpaK11BI GGWCC 3 cut(s) 70, 298, 431
XapI RAATTY 2 cut(s) 387, 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 340
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.