Rh6CG189700

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001404
Physical Location & Seq
Reverse (-)
30926491 .. 30931379
4889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG189700.1

Sequence Viewer

Length: 969 bp
ATGTCTTGGATTACCTTTTATTTTAGAATTTCAAGTGTAGTATCGTCTTCCTTTTTTTGGACAGGTGAACTTTATACAGTTGTCTGCAGTCCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGCTCCAAGGCCATAAGGATTCTGTTTCTAGTTTAGCATTTAGTACTGATGGACAGTTGCTTGCATCTGGAAGCTTGGATGGAATTATTCAAATTTGGGATATAACATCAGCAAATCTAAAAAGCACTCTTGAAGGTCCTGGAGGGGGCATTGAGTGGGTCAGGTGGCATCCTAGAGGGCATCTGGTCTTGGCTGGTTCGGAGGACTCTACAGTTTGGATGTGGAATGGCGACAAAGGTTCCTATCTTCAATTGTTTTCAGGGCATGGTGGTAGCGTGACTTGTGGTGATTTTACCCCCGATGGTAAAACAATCTGCACTGGTTCTAATGATGCAAGTTTGAGAATATGGAACCCAAAAAGTGGAGAGAACATTCATGTGGTACAAGGTCATCCTTACCATTCTGCAGGGTTGACATGCTTGGCAATAAGCTCTGATTCAACTCTAGCTGTTACTGGTTCTGAAGATGGCTCTGTCCATATTGTAAATATAACTACCGGAAAGGTTGTTAGTTCCCTGGCTTCACATTCAGATTCAGTAGAATGTATCGGACTTGCACCAAGTTTCCCTTGGGCTGCAACAGGAGGTATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTTGCCCCGTTCTACATGTGACCATGAGGTCTGTGAGAGTTTCATCTCTACATTATCTCAAGTGATTATCACCATCTGGTTCTCTTTTTCTTTATCTAATTTATTATGGTCACCAGCTTGTTTGCTTCCATTAAATGTCAATTGTTGGATGTCATACTTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

322

Amino Acids

34.76

Weight (kDa)

5.01

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NBCH_WD40 PF20426 9 - 97 1e-07 Neurobeachin beta propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 19 - 134 4.8e-07 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 24 - 183 1e-16 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 25 - 132 6e-12 G protein beta WD-40 repeat protein
Beta-prop_WDR75_1st PF23869 25 - 123 4.6e-07 WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR3_1st PF25173 26 - 176 1.1e-28 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 27 - 102 4.9e-09 WDHD1 first WD40 domain
WD40_Prp19 PF24814 28 - 189 5.3e-27 Prp19 WD40 domain
WDR55 PF24796 32 - 207 3e-12 WDR55
Beta-prop_WDR5 PF25175 35 - 102 1.3e-14 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 36 - 186 2.9e-12 CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz PF24807 36 - 141 1.6e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 55 - 186 4.3e-07 WDR19 first beta-propeller
Beta-prop_TEP1_2nd PF25047 57 - 150 2.1e-10 TEP-1 second beta-propeller
WD40 PF00400 59 - 92 5.1e-11 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 59 - 176 2.8e-18 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 60 - 185 7.2e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 60 - 189 6.3e-34 WDR5 beta-propeller domain
EIF3I PF24805 60 - 141 1.8e-06 EIF3I
Beta-prop_EML PF23409 61 - 221 3.2e-13 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 63 - 274 4.3e-38 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 64 - 134 1.1e-06 Aladin seven-bladed propeller
EIF3I PF24805 103 - 187 4.1e-11 EIF3I
WD40_Gbeta PF25391 108 - 176 5.3e-08 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 112 - 274 8.4e-19 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 112 - 190 2.1e-08 WDHD1 first WD40 domain
WD40_Gbeta PF25391 120 - 263 1.9e-14 G protein beta WD-40 repeat protein
WD40 PF00400 139 - 176 1.6e-08 WD domain, G-beta repeat
Beta-prop_EML PF23409 144 - 246 4e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd PF25047 145 - 241 1e-10 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 158 - 245 1.2e-06 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 158 - 283 2.5e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP PF24017 163 - 270 2.4e-06 SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 163 - 267 1.3e-10 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 173 - 267 1.3e-09 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 173 - 265 1e-13 WDR3 first beta-propeller domain
WD40 PF00400 181 - 219 2.8e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 182 - 273 6.2e-06 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 189 - 271 3.8e-10 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 192 - 267 8.1e-12 WDR5 beta-propeller domain
NBCH_WD40 PF20426 194 - 268 7.5e-08 Neurobeachin beta propeller domain
WD40_WDHD1_1st PF24817 194 - 297 6.7e-10 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 536
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 2 cut(s) 27, 267
AcuI CTGAAG 2 cut(s) 657, 943
AfaI GTAC 2 cut(s) 220, 558
AfiI CCNNNNNNNGG 3 cut(s) 57, 320, 536
AflIII ACRYGT 1 cut(s) 815
AgsI TTSAA 5 cut(s) 33, 266, 308, 425, 615
AjnI CCWGG 2 cut(s) 313, 690
AluBI AGCT 6 cut(s) 178, 249, 606, 623, 775, 917
AluI AGCT 6 cut(s) 178, 249, 606, 623, 775, 917
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 2 cut(s) 27, 267
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 4 cut(s) 77, 473, 862, 903
AvaII GGWCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 736
BccI CCATC 5 cut(s) 218, 248, 470, 635, 881
BciT130I CCWGG 2 cut(s) 315, 692
BfaI CTAG 3 cut(s) 204, 348, 620
BfmI CTRYAG 3 cut(s) 85, 384, 579
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 315, 692
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 415, 527
BmrFI CCNGG 2 cut(s) 315, 692
BmsI GCATC 4 cut(s) 248, 352, 364, 496
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 843
BsaJI CCNNGG 3 cut(s) 181, 690, 743
BsaWI WCCGGW 1 cut(s) 671
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 320, 536
Bse1I ACTGG 3 cut(s) 101, 499, 634
BseBI CCWGG 2 cut(s) 315, 692
BseDI CCNNGG 3 cut(s) 181, 690, 743
BseGI GGATG 5 cut(s) 259, 343, 399, 565, 954
BseLI CCNNNNNNNGG 3 cut(s) 57, 320, 536
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 101, 499, 634
BseXI GCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 475
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 672
BslI CCNNNNNNNGG 3 cut(s) 57, 320, 536
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 415, 527
BspMAI CTGCAG 2 cut(s) 89, 583
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 3 cut(s) 101, 499, 634
BssECI CCNNGG 3 cut(s) 181, 690, 743
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 181, 743
Bst2UI CCWGG 2 cut(s) 315, 692
Bst4CI ACNGT 3 cut(s) 79, 231, 388
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 909
BstF5I GGATG 5 cut(s) 259, 343, 399, 565, 954
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstNI CCWGG 2 cut(s) 315, 692
BstNSI RCATGY 2 cut(s) 594, 819
BstPI GGTNACC 1 cut(s) 909
BstSCI CCNGG 2 cut(s) 313, 690
BstSFI CTRYAG 3 cut(s) 85, 384, 579
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 5 cut(s) 259, 343, 399, 565, 954
BtsIMutI CAGTG 2 cut(s) 108, 492
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 219, 557
CviAII CATG 5 cut(s) 440, 551, 591, 816, 824
CviQI GTAC 2 cut(s) 219, 557
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 181, 743
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 657, 943
Eco91I GGTNACC 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 909
EcoRII CCWGG 2 cut(s) 313, 690
EcoT14I CCWWGG 2 cut(s) 181, 743
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 181, 743
FaeI CATG 5 cut(s) 443, 554, 594, 819, 827
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FatI CATG 5 cut(s) 439, 550, 590, 815, 823
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 5 cut(s) 266, 330, 406, 552, 961
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 3 cut(s) 204, 348, 620
GluI GCNGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 672
Hin1II CATG 5 cut(s) 443, 554, 594, 819, 827
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HindIII AAGCTT 2 cut(s) 247, 773
HinfI GANTC 4 cut(s) 194, 380, 611, 707
HpaII CCGG 1 cut(s) 672
HphI GGTGA 4 cut(s) 77, 473, 862, 903
Hpy166II GTNNAC 2 cut(s) 68, 588
Hpy188I TCNGA 8 cut(s) 93, 175, 376, 610, 637, 706, 725, 962
Hpy188III TCNNGA 2 cut(s) 243, 305
Hpy8I GTNNAC 2 cut(s) 68, 588
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 3 cut(s) 79, 231, 388
HpyCH4V TGCA 9 cut(s) 87, 113, 239, 492, 509, 581, 731, 752, 793
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 5 cut(s) 443, 554, 594, 819, 827
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 4 cut(s) 248, 352, 364, 496
MaeI CTAG 3 cut(s) 204, 348, 620
MaeIII GTNAC 4 cut(s) 451, 625, 818, 909
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 39, 160, 413, 650
MfeI CAATTG 2 cut(s) 425, 940
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 6 cut(s) 27, 258, 267, 425, 898, 940
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 116, 926
MnlI CCTC 6 cut(s) 128, 311, 344, 370, 752, 820
MseI TTAA 2 cut(s) 932, 967
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 2 cut(s) 315, 692
MunI CAATTG 2 cut(s) 425, 940
MvaI CCWGG 2 cut(s) 315, 692
NdeII GATC 1 cut(s) 97
NlaIII CATG 5 cut(s) 443, 554, 594, 819, 827
NlaIV GGNNCC 2 cut(s) 415, 527
NmuCI GTSAC 3 cut(s) 451, 818, 909
NspI RCATGY 2 cut(s) 594, 819
PciI ACATGT 1 cut(s) 815
PfeI GAWTC 3 cut(s) 194, 611, 707
PflMI CCANNNNNTGG 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 751
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 313, 690
PspEI GGTNACC 1 cut(s) 909
PspGI CCWGG 2 cut(s) 313, 690
PspN4I GGNNCC 2 cut(s) 415, 527
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PstI CTGCAG 2 cut(s) 89, 583
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 220, 558
RsaNI GTAC 2 cut(s) 219, 557
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 932, 967
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 315, 692
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 4 cut(s) 248, 352, 364, 496
SfcI CTRYAG 3 cut(s) 85, 384, 579
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 858
SmoI CTYRAG 1 cut(s) 858
Sse9I AATT 6 cut(s) 27, 258, 267, 425, 898, 940
SspMI CTAG 3 cut(s) 204, 348, 620
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 313, 690
StyI CCWWGG 2 cut(s) 181, 743
TaaI ACNGT 3 cut(s) 79, 231, 388
TasI AATT 6 cut(s) 27, 258, 267, 425, 898, 940
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 3 cut(s) 194, 611, 707
Tru1I TTAA 2 cut(s) 932, 967
Tru9I TTAA 2 cut(s) 932, 967
TscAI CASTG 2 cut(s) 108, 499
TseFI GTSAC 3 cut(s) 451, 818, 909
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 3 cut(s) 451, 818, 909
TspDTI ATGAA 2 cut(s) 539, 832
TspRI CASTG 2 cut(s) 108, 499
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 2 cut(s) 27, 267
XceI RCATGY 2 cut(s) 594, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XspI CTAG 3 cut(s) 204, 348, 620
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.