RLG00000036778

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001404
Physical Location & Seq
Reverse (-)
84403014 .. 84406432
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036778

Sequence Viewer

Length: 936 bp
ATGGCGGTTATGAAGCCTGGAGTGATTGCCTTGTTTGATGTTGATGGGACTCTCACTGCTCCCAGAAAGATCTTCCTGATGCAGACGACCAAGTTGTTGGTACATCATCATGAGCCTGATGATTCCATGCATACATTTACTGGTCATACGGAGAACAAGTATAGATACATAACAGCGAACAAGCTGTCTACTGGAAAAGTGGATAGATTAAAGATCTCTAAACATCCAGCTACTATAAAAGTCCTACAATTCCTATATTACTCTGCAGGCCATAAGGATTCTATTTCTAGTTTAGCATTTAGTACTGATGGACAGTTGCTTGCATCTGGACGCTTGGATGGAATTATTCAAATTTGCAATATAACATCAGCAAATCTAAAAAGCACTCTTGAAGGTCCTGGACGGGGCATTGAGTGGGTCAGGTGGCATCCTAGAGGGCATCTGGTCTTGGCTGGTTCGGAGGACTCTACAGTTTGGATGTGGAATATCTTCAATTGTAAAACAATCTGCACTGGTTCTAATGATGCAAGTTTGAGAATATGGAACCCAAAAAGTGGAGAGAACATTCATGTGGTACAAGGTCATCCTTACCATTCTGCAGGGTTGACATGCTTGGCAATAAGCTCTGATTCAACTCTAGCTGTTACTGGTTCTGAAGATGGATCTGTTCATATTGTAAATATAACTACTGGAAAGGTTGTTAGTTCCCTGGCTTCACATTCAGATTCAGTAGAATGTATCAGACTTGCACCAAGTTTCCCTTGGGCTGCAACAGGAGGTATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTTGCCCCGTTCTACATGTGACCATGAGGATGGAGTGACATGCTTGACCTGGCTTGGGGTATCTAGGTACCTAGCAACAGGTTGTGCGGATGGGAAGGTCCGATTATGGGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

312

Amino Acids

33.95

Weight (kDa)

7.26

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 34 - 165 8e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 58 - 170 8.4e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 88 - 168 4.6e-12 WDR3 first beta-propeller domain
WD40 PF00400 89 - 118 3.7e-06 WD domain, G-beta repeat
Beta-prop_EML PF23409 89 - 309 1.4e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5 PF25175 89 - 165 3e-15 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 91 - 164 3.3e-12 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 94 - 168 4.7e-07 WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 122 - 252 4.1e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR41 PF25178 150 - 285 8.6e-06 WDR41
WD40_MABP1-WDR62_2nd PF24782 165 - 268 3.8e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR5 PF25175 165 - 310 4.2e-25 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 166 - 310 1.2e-15 THOC3 beta-propeller domain
WD40_Prp19 PF24814 167 - 310 1.3e-18 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 167 - 273 4.5e-10 WDR36/Utp21 second beta-propeller domain
WDR55 PF24796 167 - 272 3.1e-08 WDR55
Beta-prop_WDR3_2nd PF25172 167 - 272 4.6e-12 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 167 - 310 1.9e-17 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 168 - 310 1.6e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 169 - 309 5.1e-14 WDR36/Utp21 first beta-propeller
Beta-prop_SCAP PF24017 169 - 310 7.2e-07 SCAP Beta-propeller
WD40_Gbeta PF25391 170 - 310 1.7e-10 G protein beta WD-40 repeat protein
EIF3I PF24805 170 - 310 3.7e-06 EIF3I
Beta-prop_WDR3_1st PF25173 171 - 310 3.4e-21 WDR3 first beta-propeller domain
WD40 PF00400 187 - 225 2.6e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 200 - 273 2e-09 WDHD1 first WD40 domain
NBCH_WD40 PF20426 200 - 273 1.1e-07 Neurobeachin beta propeller domain
Beta-prop_HPS5 PF23756 202 - 308 3.6e-07 HPS5 beta-propeller
WD40 PF00400 231 - 269 4.8e-06 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 235 - 310 2e-06 TEP-1 second beta-propeller
WD40 PF00400 280 - 310 1.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 885
AccB7I CCANNNNNTGG 1 cut(s) 554
AccI GTMKAC 1 cut(s) 188
AciI CCGC 2 cut(s) 5, 905
AclWI GGATC 1 cut(s) 670
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 4 cut(s) 102, 304, 576, 887
AfiI CCNNNNNNNGG 4 cut(s) 404, 554, 873, 925
AflIII ACRYGT 1 cut(s) 833
AgsI TTSAA 4 cut(s) 350, 392, 493, 633
AjnI CCWGG 4 cut(s) 16, 397, 708, 866
AluBI AGCT 6 cut(s) 184, 230, 624, 641, 793, 933
AluI AGCT 6 cut(s) 184, 230, 624, 641, 793, 933
AlwI GGATC 1 cut(s) 670
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 885
AspS9I GGNCC 2 cut(s) 395, 916
AvaII GGWCC 2 cut(s) 395, 916
BanI GGYRCC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 754
BccI CCATC 6 cut(s) 38, 302, 332, 653, 842, 902
BciT130I CCWGG 4 cut(s) 18, 399, 710, 868
BfaI CTAG 6 cut(s) 288, 432, 638, 882, 890, 934
BfmI CTRYAG 3 cut(s) 264, 468, 597
BglII AGATCT 2 cut(s) 69, 213
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 4 cut(s) 18, 399, 710, 868
Bme18I GGWCC 2 cut(s) 395, 916
BmgT120I GGNCC 2 cut(s) 395, 916
BmiI GGNNCC 2 cut(s) 545, 887
BmrFI CCNGG 4 cut(s) 18, 399, 710, 868
BmsI GCATC 5 cut(s) 69, 332, 436, 448, 514
BpmI CTGGAG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 708, 761
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 554, 873, 925
Bse1I ACTGG 5 cut(s) 145, 196, 517, 652, 694
BseBI CCWGG 4 cut(s) 18, 399, 710, 868
BseDI CCNNGG 2 cut(s) 708, 761
BseGI GGATG 7 cut(s) 223, 343, 427, 483, 583, 853, 913
BseLI CCNNNNNNNGG 4 cut(s) 404, 554, 873, 925
BseNI ACTGG 5 cut(s) 145, 196, 517, 652, 694
BseXI GCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 885
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 4 cut(s) 404, 554, 873, 925
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 69, 213, 662
BspACI CCGC 2 cut(s) 5, 905
BspANI GGCC 1 cut(s) 270
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 545, 887
BspMAI CTGCAG 2 cut(s) 268, 601
BspPI GGATC 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 885
BsrI ACTGG 5 cut(s) 145, 196, 517, 652, 694
BssECI CCNNGG 2 cut(s) 708, 761
BssMI GATC 3 cut(s) 69, 213, 662
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 4 cut(s) 18, 399, 710, 868
Bst4CI ACNGT 2 cut(s) 315, 472
BstC8I GCNNGC 2 cut(s) 268, 321
BstF5I GGATG 7 cut(s) 223, 343, 427, 483, 583, 853, 913
BstKTI GATC 3 cut(s) 72, 216, 665
BstMBI GATC 3 cut(s) 69, 213, 662
BstNI CCWGG 4 cut(s) 18, 399, 710, 868
BstNSI RCATGY 3 cut(s) 612, 837, 861
BstSCI CCNGG 4 cut(s) 16, 397, 708, 866
BstSFI CTRYAG 3 cut(s) 264, 468, 597
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 3 cut(s) 69, 213, 662
BstXI CCANNNNNNTGG 2 cut(s) 97, 848
BstYI RGATCY 3 cut(s) 69, 213, 662
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 7 cut(s) 223, 343, 427, 483, 583, 853, 913
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 510
Cac8I GCNNGC 2 cut(s) 268, 321
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 395, 916
CseI GACGC 1 cut(s) 339
Csp6I GTAC 4 cut(s) 101, 303, 575, 886
CviAII CATG 7 cut(s) 110, 127, 569, 609, 834, 842, 858
CviQI GTAC 4 cut(s) 101, 303, 575, 886
DpnI GATC 3 cut(s) 71, 215, 664
DpnII GATC 3 cut(s) 69, 213, 662
Eco130I CCWWGG 1 cut(s) 761
Eco47I GGWCC 2 cut(s) 395, 916
Eco57I CTGAAG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 4 cut(s) 16, 397, 708, 866
EcoT14I CCWWGG 1 cut(s) 761
EcoT22I ATGCAT 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 7 cut(s) 113, 130, 572, 612, 837, 845, 861
FalI AAGNNNNNCTT 2 cut(s) 745, 777
FaqI GGGAC 1 cut(s) 61
FatI CATG 7 cut(s) 109, 126, 568, 608, 833, 841, 857
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 7 cut(s) 210, 350, 414, 490, 570, 860, 920
Fsp4HI GCNGC 1 cut(s) 768
FspBI CTAG 6 cut(s) 288, 432, 638, 882, 890, 934
GluI GCNGC 1 cut(s) 768
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 270
HgaI GACGC 1 cut(s) 339
Hin1II CATG 7 cut(s) 113, 130, 572, 612, 837, 845, 861
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 6 cut(s) 49, 122, 278, 464, 629, 725
Hpy166II GTNNAC 2 cut(s) 189, 606
Hpy188I TCNGA 6 cut(s) 460, 628, 655, 724, 743, 920
Hpy188III TCNNGA 4 cut(s) 76, 110, 327, 389
Hpy8I GTNNAC 2 cut(s) 189, 606
HpyAV CCTTC 2 cut(s) 386, 907
HpyCH4III ACNGT 2 cut(s) 315, 472
Hsp92II CATG 7 cut(s) 113, 130, 572, 612, 837, 845, 861
KpnI GGTACC 1 cut(s) 889
Kzo9I GATC 3 cut(s) 69, 213, 662
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 5 cut(s) 69, 332, 436, 448, 514
MaeI CTAG 6 cut(s) 288, 432, 638, 882, 890, 934
MaeIII GTNAC 3 cut(s) 643, 836, 853
MalI GATC 3 cut(s) 71, 215, 664
MboI GATC 3 cut(s) 69, 213, 662
MboII GAAGA 3 cut(s) 64, 481, 668
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 3 cut(s) 69, 213, 662
MluCI AATT 4 cut(s) 248, 342, 351, 493
MlyI GAGTC 2 cut(s) 43, 458
MnlI CCTC 4 cut(s) 428, 454, 770, 838
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 3 cut(s) 108, 569, 846
MspR9I CCNGG 4 cut(s) 18, 399, 710, 868
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 4 cut(s) 18, 399, 710, 868
NdeII GATC 3 cut(s) 69, 213, 662
NlaIII CATG 7 cut(s) 113, 130, 572, 612, 837, 845, 861
NlaIV GGNNCC 2 cut(s) 545, 887
NmuCI GTSAC 2 cut(s) 836, 853
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 3 cut(s) 612, 837, 861
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 833
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 4 cut(s) 122, 278, 629, 725
PflMI CCANNNNNTGG 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 1 cut(s) 769
PleI GAGTC 2 cut(s) 43, 458
PpsI GAGTC 2 cut(s) 43, 458
PpuMI RGGWCCY 1 cut(s) 395
PscI ACATGT 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 4 cut(s) 16, 397, 708, 866
PspGI CCWGG 4 cut(s) 16, 397, 708, 866
PspN4I GGNNCC 2 cut(s) 545, 887
PspPI GGNCC 2 cut(s) 395, 916
PspPPI RGGWCCY 1 cut(s) 395
PstI CTGCAG 2 cut(s) 268, 601
PsuI RGATCY 3 cut(s) 69, 213, 662
RsaI GTAC 4 cut(s) 102, 304, 576, 887
RsaNI GTAC 4 cut(s) 101, 303, 575, 886
RseI CAYNNNNRTG 3 cut(s) 108, 569, 846
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 3 cut(s) 69, 213, 662
Sau96I GGNCC 2 cut(s) 395, 916
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 2 cut(s) 43, 458
ScrFI CCNGG 4 cut(s) 18, 399, 710, 868
SfaNI GCATC 5 cut(s) 69, 332, 436, 448, 514
SfcI CTRYAG 3 cut(s) 264, 468, 597
SinI GGWCC 2 cut(s) 395, 916
SmiMI CAYNNNNRTG 3 cut(s) 108, 569, 846
Sse9I AATT 4 cut(s) 248, 342, 351, 493
SsiI CCGC 2 cut(s) 5, 905
SspMI CTAG 6 cut(s) 288, 432, 638, 882, 890, 934
StyD4I CCNGG 4 cut(s) 16, 397, 708, 866
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 2 cut(s) 315, 472
TasI AATT 4 cut(s) 248, 342, 351, 493
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 4 cut(s) 122, 278, 629, 725
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 61, 517
TseFI GTSAC 2 cut(s) 836, 853
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 2 cut(s) 836, 853
TspDTI ATGAA 3 cut(s) 26, 557, 659
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 61, 517
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 395, 916
XapI RAATTY 1 cut(s) 351
XceI RCATGY 3 cut(s) 612, 837, 861
XcmI CCANNNNNNNNNTGG 1 cut(s) 759
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 6 cut(s) 288, 432, 638, 882, 890, 934
ZrmI AGTACT 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.